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gtaagctcccttaatcgatctgtttttaattaaatttaacttttagccagcttggatgggagattttatcattaaagaaatgcaatagatcttgacattattggcttttttactgccccaaaatttgcagAAGGATTGCTCCCACTCTTTTATTGGATGTTCCGCGAGATTCTCTGATAATGGGTGAGGAGATATTTGGTCCATTACTTCCTATTATCACG
species | Glycine max |
transcript | GLYMA06G12010.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGGTTGCTGGCAAGATTGTTTATGGAGGTGAAAAGGATGAAAAGAAATT AAGGATTGCTCCCACTCTTTTATTGGATGTTCCGCGAGATTCTCTGATAATEST: gi|23725278|gb|BU760599.1|BU760599
genomic: AAGGTTGCTGGCAAGATTGTTTATGGAGGTGAAAAGGATGAAAAGAAATTgtaagctccc ... aaatttgcagAAGGATTGCTCCCACTCTTTTATTGGATGTTCCGCGAGATTCTCTGATAAT
EST: AAGGTTGCTGGCAAGATTGTTTATGGAGGTGAAAAGGATGAAAAGAAATT AAGGATTGCTCCCACTCTTTTATTGGATGTTCCGCGAGATTCTCTGATAATEST: gi|254324505|gb|GR833930.1|GR833930
genomic: AAGGTTGCTGGCAAGATTGTTTATGGAGGTGAAAAGGATGAAAAGAAATTgtaagctccc ... aaatttgcagAAGGATTGCTCCCACTCTTTTATTGGATGTTCCGCGAGATTCTCTGATAAT
EST: AAGGTTGCTGGCAAGATTGTTTATGGAGGTGAAAAGGATGAAAAGAAATT AAGGATTGCTCCCACTCTTTTATTGGATGTTCCGCGAGATTCTCTGATAATEST: gi|58020263|gb|CX707005.1|CX707005
genomic: AAGGTTGCTGGCAAGATTGTTTATGGAGGTGAAAAGGATGAAAAGAAATTgtaagctccc ... aaatttgcagAAGGATTGCTCCCACTCTTTTATTGGATGTTCCGCGAGATTCTCTGATAAT
EST: GG-TGNCTGGCAAGATTG-TTATGGGAGGTGAAAAGGATGAAAAGAAATT AAGGATTGCTCCCACTCTTTTATTGGATGTTCCGCGAGATTCTCTGATAATEST: gi|302141284|gb|HO212160.1|HO212160
genomic: GGTTG-CTGGCAAGATTGTTTAT-GGAGGTGAAAAGGATGAAAAGAAATTgtaagctccc ... aaatttgcagAAGGATTGCTCCCACTCTTTTATTGGATGTTCCGCGAGATTCTCTGATAAT
EST: AAGGTTGCTGGCAAGATTGTTTATGGAGGTGAAAAGGATGAAAAGAAATT AAGGATTGCTCCCACTCTTTTATTGGATGTTCCGCGAGATTCTCTGATAAT
genomic: AAGGTTGCTGGCAAGATTGTTTATGGAGGTGAAAAGGATGAAAAGAAATTgtaagctccc ... aaatttgcagAAGGATTGCTCCCACTCTTTTATTGGATGTTCCGCGAGATTCTCTGATAAT
agaaatgcaatagatcttgacattattggcttttttactgccccaaaatttgcagAAGGATTGCTCCCACTCTTTTATTGGATGTTCCGCGAGATTCTCTGATAATGGGTGAGGAGATATTTGGTCCATTACTTCCTATTATCACG
tcttgac putative branch site (score: 3)
ttttttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctcccttaatcgatctgtttttaattaaatttaacttttagccagcttggatgggagattttatcattaaagaaatgcaatagatcttgacattattggcttttttactgccccaaaatttgcagAAGGATTGCTCCCACTCTTTTATTGGATGTTCCGCGAGATTCTCTGATAATGGGTGAGGAGATATTTGGTCCATTACTTCCTATTATCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT