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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaattatattatatattcaataaatacatatattaacttttaaaagtaacttatgttgtataagctcttgttatcttgtttcagtaagttttacacacaaagttatgaataagctattatttgataagagcttattgaataaatacttaatttccttatgtactcacctatttgcagTTCATAACTTTTGGATTTGCTTGCACTCCTTTATACTTCGTGTGGGAGAAATTCATTGGGGTGCATGAGACCAAGAGTTTGTTCAAAAGGGCTTTGGCTA

Basic information

species Glycine max
transcript GLYMA06G11540.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G11540.1 (Glycine max), 3'ss of exon 7
lower sequence: EFJ18760 (Selaginella moellendorffii), 3'ss of exon 6
gttaattatattatatattcaataaatacatatattaacttttaaaagtaacttatgttgtataagctcttgttatcttgtttcagtaagttttacacacaaagttatgaataagctattatttgataagagcttattgaataaatacttaatttccttatgtactcacctatttgcagTTCATAACTTTTGGATTTGCTTGCACTCCTTTATACTTCGTGTGGGAGAAATTCATTGGGGTGCAT-GAGACCAAGAGTTTGTTCAAAAGGGCTTTGGCTA
                                                                                                |   ||  | ||  || | |||| || |         ||  || |      || || ||||   |||          | |||||| || || ||||||||||||||||| || || |||||||||||||||||  | ||||| || ||| ||   | |  |||  | |     |    || |  
----------------------------------------------------------------------------------------------gtaagaaagatcatcgatgatctatgatct------tcgttcctgga-----gctaaacttcccattgt---------ctcgcagTTTATTACGTTTGGATTTGCTTGCACGCCCTTGTACTTCGTGTGGGAGAAGATAATTGGCGTCCATAGAAGTCCAAGGTTCCTACTTCGAGCAGCTGCCC-

upper sequence: GLYMA06G11540.1 (Glycine max), 3'ss of exon 7
lower sequence: EFJ36050 (Selaginella moellendorffii), 3'ss of exon 6
gttaattatattatatattcaataaatacatatattaacttttaaaagtaacttatgttgtataagctcttgttatcttgtttcagtaagttttacacacaaagttatgaataagct-attatttgataagagcttattgaataaatacttaatttccttatgtactcacctatttgcagTTCATAACTTTTGGATTTGCTTGCACTCCTTTATACTTCGTGTGGGAGAAATTCATTGGGGTGCAT-GAGACCAAGAGTTTGTTCAAAAGGGCTTTGGCTA
                                                                                                |   ||  | ||   |   || | |||    || || |||  |   |  |  || || ||||         || |   | |||||| || || |||||||| |||||||| || || |||||||||||||||||  | ||||| || ||| ||   | |  |||  | |     |    || |  
----------------------------------------------------------------------------------------------gtaagaaagatcatcgttcttctcactatgaactatgatcttcgttcctgga-gctaaacttcc---------catcgtctcgcagTTTATTACGTTTGGATTCGCTTGCACGCCCTTGTACTTCGTGTGGGAGAAGATAATTGGCGTTCATAGAAGTCCAAGGTTCCTACTTCGAGCAGCTGCCC-


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gataagagcttattgaataaatacttaatttccttatgtactcacctatttgcagTTCATAACTTTTGGATTTGCTTGCACTCCTTTATACTTCGTGTGGGAGAAATTCATTGGGGTGCATGAGACCAAGAGTTTGTTCAAAAGGGCTTTGGCTA
                                      tactcac  putative branch site (score: 1)
                                        ctcacct  CT-rich tract
         ttattgaataaatact  TA-rich tract