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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattattatctgcttcaactgctacaatatcctgctttggttctaatttctaaatggacttgttctttcagGTTACTACATCAATATACAATCTCATATTGGGAAAGCTATATTGTGATCACTATGGTACAATGCGTATACAGGGAAACCAAGAGTACTCGTGTAAACTGA

Basic information

species Glycine max
transcript GLYMA06G11470.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G11470.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S18_231V6.1 (Physcomitrella patens), 3'ss of exon 7
---------------------------gtaattattatctgcttcaactgctacaatatcctgctttggttctaatttctaaatggacttgttctttcagGTTACTACATCAATATACAATCTCATATTGGGAAAGCTATATTGTGATCACTATGGTACAATGCGTATACAGGGAAACCAAGAGTACTCGTGTAAACTGA
                              ||||  |  |  |   | |  || ||| || |  |      ||  | |  | |   |        ||||||| || ||||||||||||||| | || || || ||||| |||   || || |||||||||||||| |||||||| ||||  |||||||||   ||| |||
ggatgtgttttgacatacatgtgcattcatattagaagatcttctcattattaaaatttcatattccttacctgttctagacacttatgataatgttcagGTCACAACATCAATATACAATTTGATTTTAGGGAAGCTGTATGTGGACCATTATGGTACAATGCGCATACAGGGCAACCGGGAGTACTCGATAAAATTGA

upper sequence: GLYMA06G11470.1 (Glycine max), 3'ss of exon 7
lower sequence: EFJ15167 (Selaginella moellendorffii), 3'ss of exon 6
gtaattattatctgcttcaactgctacaatatcctgctttggttctaatttctaaatggacttgttctttcagGTTACTACATCAATATACAATCTCATATTGGGAAAGCTATATTGTGATCACTATGGTACAATGCGTATACAGGGAAACCAAGAGTACTCGTGTAAACTGA
                        ||    |  | || || |   |  | |   |  | |||||      ||||| || |||||||| |||||||||||| | |||||||| || ||||||||||| || |||||||| || || |||||||  ||    || || || || |
-----------------------gtagttcaaacggcatttggattggtctaacaccgtacttg-----acagGTGACCACATCAATTTACAATCTCATACTAGGAAAGCTTTACTGTGATCACTACGGCACAATGCGCATTCAAGGAAACCGCGACATGTCCTGCAAGCTTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactgctacaatatcctgctttggttctaatttctaaatggacttgttctttcagGTTACTACATCAATATACAATCTCATATTGGGAAAGCTATATTGTGATCACTATGGTACAATGCGTATACAGGGAAACCAAGAGTACTCGTGTAAACTGA
                               ttctaaa  putative branch site (score: 2)
                                          cttgttctttc  putative PPT
                        ttctaatttctaaat  TA-rich tract