Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatgctatctcaagattcttgatttctttcttgtgctttccttgccattttttcctttaccaccttcctctatcccatttctctcccaaataagttttaatattccaacatgtgttgctgtttagGTGTCCTGGCAACAACCCTTGCTCGTCATCTATCAAAACCCAGGGTCTACATTGGGTGTATGAAATCTGGACCTGTCCTTTCTAGAAA

Basic information

species Glycine max
transcript GLYMA06G11330.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G11330.1 (Glycine max), 3'ss of exon 7
lower sequence: EFJ10043 (Selaginella moellendorffii), 3'ss of exon 7
gtacatgctatctcaagattcttgatttctttcttgtgctttccttgccattttttcctttaccaccttcctctatcccatttctctcccaaataagttttaatattccaacatgtgttgctgttt--agGTGTCCTGGCAACAACCCTTGCTCGTCATCTATCAAAACCCAGGGTCTACATTGGGTGTATGAAATCTGGACCTGTCCTTTCTAGAAA
                                                                   |    ||  |  ||    |   |    |||||| | | || |    | | ||| |||||  |||  | ||  |    || || ||||| |||  ||| || ||  | | ||||||||| |||||||| ||||||||||||||  ||  |||
------------------------------------------------------------------gtaagcctgacaaatgaaacgagctg-caagttt-attctttctctctttattgttgtttccagGCATGCTCACTGTCACTCTGGCTCGGCATAGATCCAAGCCTCGCGCCTACATTGGATGTATGAAGTCTGGACCTGTCCTGGCTCAAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcccatttctctcccaaataagttttaatattccaacatgtgttgctgtttagGTGTCCTGGCAACAACCCTTGCTCGTCATCTATCAAAACCCAGGGTCTACATTGGGTGTATGAAATCTGGACCTGTCCTTTCTAGAAA
                        ttttaat  putative branch site (score: 3)
                 aaataagttttaatat  TA-rich tract