1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatttattatttttggatccaaacataataatgtttgtagactcagttataatatatttaagggtaattattggattggtacagAGAATTTCCTCAGATGAAATGCAATTCAGGTGCTTGCCCAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCATATGATAATCAGAATCATA
species | Glycine max |
transcript | GLYMA06G08480.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAAATATACTTCTTGTTTCCTCTGAATATGTAAAGCTCCCTAGCTATAAG AGAATTTCCTCAGATGAAATGCAATTCAGGTGCTTGCCCAAGTCTAGTGCTEST: gi|151397612|gb|EV267485.1|EV267485
genomic: AAAATATACTTCTTGTTTCCTCTGAATATGTAAAGCTCCCTAGCTATAAGgtatttatta ... attggtacagAGAATTTCCTCAGATGAAATGCAATTCAGGTGCTTGCCCAAGTCTAGTGCT
EST: AAAATATACTTCTTGTTTCCTCTGAATATGTAAAGCTCCCTAGCTATAAG AGAATTTCCTCAGATGAAATGCAATTCAG-TGCTTGCCCAAGTCTAGTGCTEST: gi|9985118|gb|BE659226.1|BE659226
genomic: AAAATATACTTCTTGTTTCCTCTGAATATGTAAAGCTCCCTAGCTATAAGgtatttatta ... attggtacagAGAATTTCCTCAGATGAAATGCAATTCAGGTGCTTGCCCAAGTCTAGTGCT
EST: GAATATGTAAAGCTCCCTAGCTATAAG AGAATTNNNNCAGATGAAATGCAATTCAGGTGCTTGCCCAAGTCTAGTGCTEST: gi|193585084|gb|FK539449.1|FK539449
genomic: GAATATGTAAAGCTCCCTAGCTATAAGgtatttatta ... attggtacagAGAATTTCCTCAGATGAAATGCAATTCAGGTGCTTGCCCAAGTCTAGTGCT
EST: CCCTAGCTATAAG AGAATTTCCTCAGATGAAATGCAATTCAGGTGCTTGCCCAAGTCTAGTGCTEST: gi|13481114|gb|BG510457.1|BG510457
genomic: CCCTAGCTATAAGgtatttatta ... attggtacagAGAATTTCCTCAGATGAAATGCAATTCAGGTGCTTGCCCAAGTCTAGTGCT
EST: AAAATATACTAATGGTTTCCTCTGAATATGTAAAGCTCCCTAGCTATAAG AGAATTTCCTCAGATGAAATGCAATTCAGGTGCTTGCCCAAGTCTAGTGCT
genomic: AAAATATACTTCTTGTTTCCTCTGAATATGTAAAGCTCCCTAGCTATAAGgtatttatta ... attggtacagAGAATTTCCTCAGATGAAATGCAATTCAGGTGCTTGCCCAAGTCTAGTGCT
aatgtttgtagactcagttataatatatttaagggtaattattggattggtacagAGAATTTCCTCAGATGAAATGCAATTCAGGTGCTTGCCCAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCATATGATAATCAGAATCATA
agttataatatattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttattatttttggatccaaacataataatgtttgtagactcagttataatatatttaagggtaattattggattggtacagAGAATTTCCTCAGATGAAATGCAATTCAGGTGCTTGCCCAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCATATGATAATCAGAATCATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT