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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacacatttattaattaattaaaaactatgtagggaaaaccttccaattattatatgataatgataatcattatgattgtgtatttgtttgctttgtagAAAAAGCAGCGGATTTTCTAGAGGTGCTTCAATATACAGAGGGGTCACAAG

Basic information

species Glycine max
transcript GLYMA06G05170.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G05170.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G021573_T01 (Zea mays), 3'ss of exon 5
gtacacacatttattaattaattaaaaactatgtagggaaaaccttccaattattatatgataatgataatcattatgattgtgtatttgtttgctttgtagAAAAAGCAGCGGATTTTCTAGAGGTGCTTCAATATACAGAGGGGTCACAAG
         |   |   |  | ||     ||| |    | ||||||         |  |  |  ||    |   |  |  |||         |  | | ||| | |||||||||||||||| |||||||||| || ||| ||||||| |||||
--------gtcagtgcttcgagtatgcgttatattataacaaccttgtttcatcgacgtattcctg-cgtttcctgaggctgtcgccgatcatcatatatagGAGAAGCAGCGGATTTTCTCGAGGTGCTTCCATCTACCGAGGGGTGACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caattattatatgataatgataatcattatgattgtgtatttgtttgctttgtagAAAAAGCAGCGGATTTTCTAGAGGTGCTTCAATATACAGAGGGGTCACAAG
                                           tttgcttt  CT-rich tract
     attatatgataatgat  TA-rich tract