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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttttgtagcaagtgttctgaatgttagcatattgctctccagttatgtcttctgacatggaaacatctttgtctgagatgcagGTTAGAAACAAAATATCCACTTTGCAACATGTTCAAGTTGTTCATCTGTGCAGTGTGTCAGGTAGAGATTAAACCCGGGGAGGGTATTTCCATACATGAG

Basic information

species Glycine max
transcript GLYMA06G04210.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G04210.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G47380.1 (Arabidopsis thaliana), 3'ss of exon 8
-----------------------gttggttttgtagcaagtgttctgaatgttagcat-attgctctccagttatgtcttctga------catggaaacatctttgtctgagatgcagGTTAGAAACAAAATATCCACTTTGCAACATGTTCAAGTTGTTCATCTGTGCAGTGTGTCAGGTAGAGATTAAACCCGGGGAGGGTATTTCCATACATGAG
                        ||     | || ||  | |  |   || |||| | ||| |  || | | || |   |  |        | |     |  || | |    ||||| ||||| ||||| || || |||||||| ||||| ||||||||||| ||||| |||||||| |||||  | ||||| || || ||| | || || ||||  
gtgtgattctctgaatatatgtgcttaagcatataccatttttcatacttgatagcttcatttcgatctactaatcttaaccaagttttctttcgtttttttcttctgtttattgcagATTAGACACAAAGTACCCGCTTTGCAATATGTTTAAGTTGTTCATGTGTGCTGTGTGTCAAGTAGAAGTGAAACCTGGAGAAGGTGTCTCGATCCATGCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192331603|gb|FK019964.1|FK019964
EST:     GATGTGGTACAGGAACTATACGAGGAAGGGTCTGCTATGCTTTCAGAGAG                         GTTAGAAACAAAATATCCACTTTGCAACATGTTCAAGTTGTTCATCTGTGC
genomic: GATGTGGTACAGGAACTATACGAGGAAGGGTCTGCTATGCTTTCAGAGAGgttggttttg ... tgagatgcagGTTAGAAACAAAATATCCACTTTGCAACATGTTCAAGTTGTTCATCTGTGC
EST: gi|15812519|gb|BI784794.1|BI784794
EST:     GATGTGGTACAGGAACTATACGAGGAAGGGTCTGCTATGCTTTCAGAGAG                         GTTAGAAACAAAATATCCACTTTGCAACATGTTCAAGTTGTTCATCTGTGC
genomic: GATGTGGTACAGGAACTATACGAGGAAGGGTCTGCTATGCTTTCAGAGAGgttggttttg ... tgagatgcagGTTAGAAACAAAATATCCACTTTGCAACATGTTCAAGTTGTTCATCTGTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattgctctccagttatgtcttctgacatggaaacatctttgtctgagatgcagGTTAGAAACAAAATATCCACTTTGCAACATGTTCAAGTTGTTCATCTGTGCAGTGTGTCAGGTAGAGATTAAACCCGGGGAGGGTATTTCCATACATGAG
                     ttctgac  putative branch site (score: 2)
                                     tctttgtct  putative PPT