Sequence
atgc intronic sequence ATGC exonic sequencegtaacactacattcaattctgttaacggagttttctctcaatcaactagttttgttatttgaaaattctaactaaccgtaagttctcagTGAGCTGCCAGAATTTCTTGCTGGTAGTTGCACTTGTGTAGATCAAGGTGGTTGTATGAGGTCTGATAAAGGGCCATGGCAAGACCCAAACATTTTAAAG
Basic information
species | Glycine max |
transcript | GLYMA06G03300.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G03300.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G75370.1 (Arabidopsis thaliana), 3'ss of exon 7
----------------------------gtaacactacattcaattctgttaacggagttttctctca-atcaactagttttgttatttgaaaattctaactaaccgtaag---ttctcagTGAGCTGCCAGAATTTCTTGCTGGTAGTTGCACTTGTGTAGATCAAGGTGGTTGTATGAGGTCTGATAAAGGGCCATGGCAAGACCCAAACATTTTAAAG
| ||| | || | || || | ||| ||| || | | | || | | | ||||| | | || |||| |||||||||| ||||||| ||| | |||||| |||| ||||| ||||||||||||||| ||||||||||| || ||| | ||||| | || ||||||
gttgagacatctcaatcctcttgtttggttcacatgagtccaaaatatgatatagcttgtttggttcacatgagtccaaaatatgatat-agcttcctaaccatttttggaactttttcagCCAGCTGCCAGATTTTCTTGGTGGCACTTGCACCTGTGCAGATCGAGGTGGTTGTATGAGATCTGATAAAGGCCCCTGGAATGACCCTGAGATATTAAAG
upper sequence: GLYMA06G03300.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G19650.2 (Arabidopsis thaliana), 3'ss of exon 6
gtaacactacattcaattctgttaacggagttttctctcaatcaactagttttgttatt-tgaaaattctaactaa--ccgtaagtt-ctcagTGAGCTGCCAGAATTTCTTGCTGGTAGTTGCACTTGTGTAGATCAAGGTGGTTGTATGAGGTCTGATAAAGGGCCATGGCAAGACCCAAACATTTTAAAG
| | || | || | | | |||| | |||| | ||| | |||| ||| |||| | || || |||| |||||||||| ||| | | ||||| ||||||||||| |||||| || ||||||||||| |||||||||||||| ||| ||||| | | || |||||
---gtatgagttttgagtccttaactgttttttttttcttatcatatctccagaatataattaaaactctgactatatttggaacttgttcagCCAGCTGCCAGATTTTTTCGGTGGTACTTGCACTTGTGCAGATCAGGGAGGTTGTATGAGATCTGATAAAGGGCCCTGGAAAGACTCTGAGATACTAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctctcaatcaactagttttgttatttgaaaattctaactaaccgtaagttctcagTGAGCTGCCAGAATTTCTTGCTGGTAGTTGCACTTGTGTAGATCAAGGTGGTTGTATGAGGTCTGATAAAGGGCCATGGCAAGACCCAAACATTTTAAAG
aactaac putative branch site (score: 1)
ttctc putative PPT
ttttgttatttgaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaacactacattcaattctgttaacggagttttctctcaatcaactagttttgttatttgaaaattctaactaaccgtaagttctcagTGAGCTGCCAGAATTTCTTGCTGGTAGTTGCACTTGTGTAGATCAAGGTGGTTGTATGAGGTCTGATAAAGGGCCATGGCAAGACCCAAACATTTTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA