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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttaatggctccattttttatatgtttatattaatctctgcatgttacaatttttgtatttttgtttttcttttccattgactaatgctttgtaattttttgcactgctacaatttatatgatccttttaaatgcctaatatattattgtgcacatgatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGCACTTGTGAAGATCAGGGAGGTTGCCTTAGATCTGATAAAGGGCCCTGGAAAAACCCTGATATATTCAAG

Basic information

species Glycine max
transcript GLYMA06G01260.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01260.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv03s0038g04470.t01 (Vitis vinifera), 3'ss of exon 8
gtacttaatggctccattttttatatgtttatattaatctctgcatgttacaatttttgtatttttgtttttcttttccattgactaa-tgctttgtaattttttg-cactgctacaatttatatgatccttttaaatgcctaatatattattgtgcacatgatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGCACTTGTGAAGATCAGGGAGGTTGCCTTAGATCTGATAAAGGGCCCTGGAAAAACCCTGATATATTCAAG
                         |  ||| | |    ||    ||| |      | || | |||||| | |||||  ||   |||| || || || |||  ||| |||  || || | ||  ||     | ||||   ||   | ||| ||| |  |||  || |||||||||||||||||||| || |||||||| || |||| ||||||||||||||||||  | |||||||| || || ||||| ||||| |||||||| |||
------------------------gtaattacagttgattc-atctgtcatggagatagtttatttgttctactttt--atccgctaagtgtttggtgattacttgtcacaactgca-tctacctg---tctctaaacttctggaaaatt-ttgggatcat--tgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGGTTGCCTCCGGTCTGATAAGGGACCATGGAATAACCCAGATATATTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208304061|gb|GE103834.1|GE103834
EST:     TTGCTTGAAGTTATAGATGCCAG                         TGAGTTGCCAGAATTTCTGGGAGGTACCTGCACTTGTGAAGATCAGGGAGG
genomic: TTGCTTGAAGTTATAGATGCCAGgtacttaatg ... catgatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGCACTTGTGAAGATCAGGGAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacaatttatatgatccttttaaatgcctaatatattattgtgcacatgatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGCACTTGTGAAGATCAGGGAGGTTGCCTTAGATCTGATAAAGGGCCCTGGAAAAACCCTGATATATTCAAG
                         gcctaat  putative branch site (score: 3)
                 ttttaaatgcctaata  TA-rich tract