Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagccattgtatccctttgtgtcatttttcattatattctccgtatagaagtcaagtatgctattagaatgttacgtcttttttttttgtatcaacaaatgattatatgacacatgtatattttaataatagATGATATCAGAACGACAACGAATTGAAGCCCCTCCTACACCTAGTGTGGATAGCAGCATGACACCACCCCCATCATATGAGGAAGTTAATGGTGTATATG

Basic information

species Glycine max
transcript GLYMA06G01120.3
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01120.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv03s0038g00460.t01 (Vitis vinifera), 3'ss of exon 7
gtgagccattgtatccctttgtgtcatttttcattatattctccgtatagaagtcaagtatgctattagaatgttacgtcttttttttttgtatcaacaaatgattatatgacacatgtatattttaataatagATGATATCAGAACGACAACGAATTGAAGCCCCTCCTACACCTAGTGTGGATAGCAGCATGACACCACCCCCATCATATGAGGAAGTTAATGGTGTATATG
||  |  ||  | || |   || || |||  | |  |||| |    |  | |      |||| | |    || ||   ||  |  ||| ||  | | |  ||||||||||  ||  | ||| | | | | ||||||||| ||||| ||||||||||||||||| |||||||  |||  |||||| | ||  | | | ||||| ||||| ||||| |||||||| || |||| ||
gtatggaatgatgtcaccaagt-tcttttaccttagtatttttgccagtggatc----tatgattt----atcttgt-tcaatgctttatgctttagcttatgattatattccatctctat-tgtgattgatagATGATTTCAGAGCGACAACGAATTGAAGCACCTCCTAGCCCTCCTGTGGAAAACAATACGCCCCCACCTCCATCGTATGAAGAAGTTAACGGAGTATTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208225926|gb|GE021081.1|GE021081
EST:     GTGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAG                         ATGAATATCAGAACGA
genomic: GTGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAGgtgagccatt ... ttaataatagATGA-TATCAGAACGA
EST: gi|151405314|gb|EV275128.1|EV275128
EST:     GTGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAG                         ATGATATCAGAACGACAACGAATTGAAGCCCCTCCTACACCTAGTGTGGAT
genomic: GTGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAGgtgagccatt ... ttaataatagATGATATCAGAACGACAACGAATTGAAGCCCCTCCTACACCTAGTGTGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttttttttgtatcaacaaatgattatatgacacatgtatattttaataatagATGATATCAGAACGACAACGAATTGAAGCCCCTCCTACACCTAGTGTGGATAGCAGCATGACACCACCCCCATCATATGAGGAAGTTAATGGTGTATATG
                                           ttttaat  putative branch site (score: 3)
                   aaatgattatatgaca  TA-rich tract