Sequence
atgc intronic sequence ATGC exonic sequencegtgagccattgtatccctttgtgtcatttttcattatattctccgtatagaagtcaagtatgctattagaatgttacgtcttttttttttgtatcaacaaatgattatatgacacatgtatattttaataatagATGATATCAGAACGACAACGAATTGAAGCCCCTCCTACACCTAGTGTGGATAGCAGCATGACACCACCCCCATCATATGAGGAAGTTAATGGTGTATATG
Basic information
species | Glycine max |
transcript | GLYMA06G01120.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G01120.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv03s0038g00460.t01 (Vitis vinifera), 3'ss of exon 7
gtgagccattgtatccctttgtgtcatttttcattatattctccgtatagaagtcaagtatgctattagaatgttacgtcttttttttttgtatcaacaaatgattatatgacacatgtatattttaataatagATGATATCAGAACGACAACGAATTGAAGCCCCTCCTACACCTAGTGTGGATAGCAGCATGACACCACCCCCATCATATGAGGAAGTTAATGGTGTATATG
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gtatggaatgatgtcaccaagt-tcttttaccttagtatttttgccagtggatc----tatgattt----atcttgt-tcaatgctttatgctttagcttatgattatattccatctctat-tgtgattgatagATGATTTCAGAGCGACAACGAATTGAAGCACCTCCTAGCCCTCCTGTGGAAAACAATACGCCCCCACCTCCATCGTATGAAGAAGTTAACGGAGTATTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208225926|gb|GE021081.1|GE021081EST: GTGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAG ATGAATATCAGAACGA
genomic: GTGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAGgtgagccatt ... ttaataatagATGA-TATCAGAACGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttttttttttgtatcaacaaatgattatatgacacatgtatattttaataatagATGATATCAGAACGACAACGAATTGAAGCCCCTCCTACACCTAGTGTGGATAGCAGCATGACACCACCCCCATCATATGAGGAAGTTAATGGTGTATATG
ttttaat putative branch site (score: 3)
aaatgattatatgaca TA-rich tract