Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttagaacttcaattgggttgctgttgctctatgttctctgtagaaaacttatgcattgtcactttgatgatatagTTTCTTAGCTGGTGTGTTAGCATGGAAAGATCCACATGTTTTGGTTCCTGCCTTGCAAATTTCAGAAATTCTTATGGAAAAGCTTCCTGGAATTTTCTCT

Basic information

species Glycine max
transcript GLYMA06G00600.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G00600.2 (Glycine max), 3'ss of exon 7
lower sequence: AT4G38600.1 (Arabidopsis thaliana), 3'ss of exon 7
-----gtatttagaacttcaattgggttgctgttgctctatgttctctgtagaaaacttatgcattgtcactttgatgatatagTTTCTTAGCTGGTGTGTTAGCATGGAAAGATCCACATGTTTTGGTTCCTGCCTTGCAAATTTCAGAAATTCTTATGGAAAAGCTTCCTGGAATTTTCTCT
      | ||||  |  | ||||  |||    |  | | |   | | || |   |  |  | |||| |   | |  | || ||| ||||| |||||||| || ||||||||||| ||||| || |||||||||||  | ||| || |||| ||| | |||||||||||||||| ||  ||||| 
gtatgctgtttacgatataaattaagtt----tgacacgacagtgtgtgca---acttcttacatt-tttttcttcttatgtagCTTCTTGGCTGGTGTCTTGGCATGGAAAGACCCACAGGTCTTGGTTCCTGCTCTACAAGTTGCAGAGATTTTGATGGAAAAGCTTCCTGAAACATTCTCG

upper sequence: GLYMA06G00600.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv03s0038g02340.t01 (Vitis vinifera), 3'ss of exon 7
-------------------gtatttaga-acttcaattgggttgctgttgctctatgttctctgtagaaaacttatgcattgtcactttgatgatatagTTTCTTAGCTGGTGTGTTAGCATGGAAAGATCCACATGTTTTGGTTCCTGCCTTGCAAATTTCAGAAATTCTTATGGAAAAGCTTCCTGGAATTTTCTCT
                    ||| || | |  |   ||   |    | |  |   |    |      ||  |||||||||||| | |       | |||||||||||||||||| ||||||||||||||||| || || |||||||||||| | |||||  | || || || |||||||| |||||||| |  || || 
gtacttgcatttcaaatatatatatacatatattttttatttcaaaggtagttactagaatgctggaaatgcttatgcattgttattacttgattctagTTTCTTAGCTGGTGTTTTAGCATGGAAAGATCCTCAAGTGTTGGTTCCTGCCCTCCAAATAGCTGAGATCCTGATGGAAAAACTTCCTGGGACGTTTTCC

upper sequence: GLYMA06G00600.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv04s0023g03830.t01 (Vitis vinifera), 3'ss of exon 7
gtatttagaacttcaattgggttgctgttgctctatgttctctgtagaa--aacttatgcattgtcactttgatgatatagTTTCTTAGCTGGTGTGTTAGCATGGAAAGATCCACATGTTTTGGTTCCTGCCTTGCAAATTTCAGAAATTCTTATGGAAAAGCTTCCTGGAATTTTCTCT
||| |||    ||   ||   ||  |||      |   | | || |     ||  | ||  ||     ||||    |  |||||| |||||||||| ||||||| ||| ||||| || |||||| |||||| | | |||||  | || ||||| |||||||||||||||  || |||||| 
gtactta---tttttcttc--ttcttgtgagagcagaatttttgaaacttcaatatctgagtttattatttggctttccagTTTCCTAGCTGGTGTTTTAGCATCGAAGGATCCGCAAGTTTTGATTCCTGGCCTCCAAATGGCTGAGATTCTCATGGAAAAGCTTCCTAAAACTTTCTCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209718733|gb|BW671934.1|BW671934
EST:     AGCACAGCTGAGATGATCCAGTCTTTGTTGAGTGTAACAAATATATCAAG                         TTTCTTAGCTGGTGTGTTAGCATGGAAAGATCCACATGTTTTGGTTCCTGC
genomic: AGCACAGCTGAGATGATCCAGTCTTTGTTGAGTGTAACAAATATATCAAGgtatttagaa ... gatgatatagTTTCTTAGCTGGTGTGTTAGCATGGAAAGATCCACATGTTTTGGTTCCTGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttgctctatgttctctgtagaaaacttatgcattgtcactttgatgatatagTTTCTTAGCTGGTGTGTTAGCATGGAAAGATCCACATGTTTTGGTTCCTGCCTTGCAAATTTCAGAAATTCTTATGGAAAAGCTTCCTGGAATTTTCTCT
                                         ctttgat  putative branch site (score: 5)
                       aaaacttat  TA-rich tract