Sequence
atgc intronic sequence ATGC exonic sequence...tggtttaattatgttgcttattttatatcatataatctcatatcataattatacgtatatgatggcattgtgtctgccctccttttcccttgccatgcagGCAGAGTTACTCCAGAGAGTGTAACATATAGCTTTGGGACCCTTTTGCTTGACCTCCTCAGTGGCAAGCATATTCCTCCAAGCCAT
Basic information
species | Glycine max |
transcript | GLYMA05G37870.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G37870.1 (Glycine max), 3'ss of exon 7
lower sequence: AT5G41260.1 (Arabidopsis thaliana), 3'ss of exon 5
--------------------------------------------------------------------------tggtttaattatg-ttgcttattttatatcatataatctca-tatcataattatacgtata---tgatggcattgtgtctgccctccttttccctt----gccatg------------cagGCAGAGTTACTCCAGAGAGTGTAACATATAGCTTTGGGACCCTTTTGCTTGACCTCCTCAGTGGCAAGCATATTCCTCCAAGCCAT
||| || || | ||||| | | | | | |||| | | | | || | | | |||||| |||| | || || | | ||| |||| | || || || || ||||||| ||| |||||||| || || || |||||||| || ||||| |||||||| ||||||||||||
gtatattttgacaaaagattgtgcaaatacctcatcgagtctttcactacctaaattgtttcctgggattatcaaaattttcttgcaatttataattttccagctgacagctaaggtttcatgaaaacatgaatgctttatttggattgtggctgcttttctgttttttattgggttatgtgtttatttctacagGTCGCGTGACACCTGAAAGTGTAATATACAGCTTTGGAACTCTATTACTTGACCTTCTGAGTGGAAAGCATATACCTCCAAGCCAT
upper sequence: GLYMA05G37870.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv02s0025g03550.t01 (Vitis vinifera), 3'ss of exon 7
tggtttaattatgttgcttattttatatcatataatctcata--tcataattatacgtatatgatggcattgtgtctgccctccttttcccttgccatgcagGCAGAGTTACTCCAGAGAGTGTAACATATAGCTTTGGGACCCTTTTGCTTGACCTCCTCAGTGGCAAGCATATTCCTCCAAGCCAT
| | || ||| || || ||| | || | || | | || | || | | | | | ||||| | |||||| || || || || || ||||||| ||||| ||||| ||||||||||||||||| |||||||| || ||||||||||||||||||
-gcaatgcatacaatgca-atcttgtattttgagatgtaatgatttttttttgttggttactttgagttccgaaataatcggcattttctgcttttctgcagGAAGGGTAACACCTGAAAGTGTAATGTATAGTTTTGGCACCCTTTTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taattatacgtatatgatggcattgtgtctgccctccttttcccttgccatgcagGCAGAGTTACTCCAGAGAGTGTAACATATAGCTTTGGGACCCTTTTGCTTGACCTCCTCAGTGGCAAGCATATTCCTCCAAGCCAT
ttgtgtctgccctcct CT-rich tract
tatatgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tggtttaattatgttgcttattttatatcatataatctcatatcataattatacgtatatgatggcattgtgtctgccctccttttcccttgccatgcagGCAGAGTTACTCCAGAGAGTGTAACATATAGCTTTGGGACCCTTTTGCTTGACCTCCTCAGTGGCAAGCATATTCCTCCAAGCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - -tgttgct
- - - - - - - - - - - - - - - - - - - catatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatggc