1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttgcaccttactttttactgatatctgtaattccaaaaccatctcctatgcttttcataactttgcttgattgttgccctgctcgttcagCTGGAATGTACTGCCTGTGGTCATTCCTGGTTTGCTTCCCGTGATGAGGTGTCTGAGCTGACTATAGATGCATCAGATTCAAAAAGAAGTGTAGGCACGG
species | Glycine max |
transcript | GLYMA05G37830.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGGTGGGCTTGAGGGATATTATCCATGCTGGACATGGTGATCGATATCAG CTGGAATGTACTGCCTGTGGTCATTCCTGGTTTGCTTCCCGTGATGAGGTGEST: gi|6914466|gb|AW395996.1|AW395996
genomic: AGGTGGGCTTGAGGGATATTATCCATGCTGGACATGGTGATCGATATCAGgtttgcacct ... gctcgttcagCTGGAATGTACTGCCTGTGGTCATTCCTGGTTTGCTTCCCGTGATGAGGTG
EST: AGGTGGGCTTGAGGGATATTATCCATGCTGGACATGGTGATCGATATCAG CTGGAATGTACTGCCTGTGGTCATTCCTGGTTTGCTTCCCGTGATGAGGTG
genomic: AGGTGGGCTTGAGGGATATTATCCATGCTGGACATGGTGATCGATATCAGgtttgcacct ... gctcgttcagCTGGAATGTACTGCCTGTGGTCATTCCTGGTTTGCTTCCCGTGATGAGGTG
aaaccatctcctatgcttttcataactttgcttgattgttgccctgctcgttcagCTGGAATGTACTGCCTGTGGTCATTCCTGGTTTGCTTCCCGTGATGAGGTGTCTGAGCTGACTATAGATGCATCAGATTCAAAAAGAAGTGTAGGCACGG
ccctgctc CT-rich tract
ttttcataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcaccttactttttactgatatctgtaattccaaaaccatctcctatgcttttcataactttgcttgattgttgccctgctcgttcagCTGGAATGTACTGCCTGTGGTCATTCCTGGTTTGCTTCCCGTGATGAGGTGTCTGAGCTGACTATAGATGCATCAGATTCAAAAAGAAGTGTAGGCACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT