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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attttaaagaattcaatacattttttagccacttttttttggttaatgtatgtcattttactcttaattcatggttctgatagaagtgagtgcgccgcagATTCCTGGGTCTGCAAATCAATATGATAGTGTGCTCCATGCACTTTACAAAATTAGTAAGAGTGAAGGATTTAAGGGCCTGTACAG

Basic information

species Glycine max
transcript GLYMA05G37810.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16345824|gb|BI971419.1|BI971419
EST:     CTTTATTCACAACCCCTTTTGATGTGATCAAGACTAGATTACAGACACAG                         ATTCCTGGGTCTGCAAATCAATATGATAGTGTGCTCCATGCACTTTACAAA
genomic: CTTTATTCACAACCCCTTTTGATGTGATCAAGACTAGATTACAGACACAGgtatgtaata ... tgcgccgcagATTCCTGGGTCTGCAAATCAATATGATAGTGTGCTCCATGCACTTTACAAA
EST: gi|58017466|gb|CX704208.1|CX704208
EST:     CTTTATTCACAACCCCTTTTGATGTGATCAAGACTAGATTACAGACACAG                         ATTCCTGGGTCTGCAAATCAATATGATAGTGTGCTCCATGCTCTTTACAAA
genomic: CTTTATTCACAACCCCTTTTGATGTGATCAAGACTAGATTACAGACACAGgtatgtaata ... tgcgccgcagATTCCTGGGTCTGCAAATCAATATGATAGTGTGCTCCATGCACTTTACAAA
EST: gi|8284513|gb|BE022072.1|BE022072
EST:     CTTTATTCACAACCCCTTTTGATGTGATCAAGACTAGATTACAGACACAG                         ATTCCTGGGTCTGCAAATCAATATGATAGTGTGCTCCATGCACTTTACAAA
genomic: CTTTATTCACAACCCCTTTTGATGTGATCAAGACTAGATTACAGACACAGgtatgtaata ... tgcgccgcagATTCCTGGGTCTGCAAATCAATATGATAGTGTGCTCCATGCACTTTACAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtatgtcattttactcttaattcatggttctgatagaagtgagtgcgccgcagATTCCTGGGTCTGCAAATCAATATGATAGTGTGCTCCATGCACTTTACAAAATTAGTAAGAGTGAAGGATTTAAGGGCCTGTACAG
                             ttctgat  putative branch site (score: 3)
         attttactcttaatt  TA-rich tract