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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgccatcattattctcgctttatgcccctctcctgttaaaattcttgtactgatgataatatagtaatcagctttagttacttccttgcagTTGTTGTTCCAGCTCCTAAGCCTGTTGTTACCAAGCCTCAACCAACCCCCAGTCCCAAGACAACTCCACCTCCAG

Basic information

species Glycine max
transcript GLYMA05G36930.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296217|gb|FG989758.1|FG989758
EST:     TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAG                         TTGTTGTTCCAGCTCCTAAGCCTGTTGTTACCAAGCCTCAACCAACCCCCA
genomic: TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGgtattgccat ... ttccttgcagTTGTTGTTCCAGCTCCTAAGCCTGTTGTTACCAAGCCTCAACCAACCCCCA
EST: gi|192298466|gb|FG988467.1|FG988467
EST:     TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAG                         TTGTTGTTCCAGCTCCTAAGCCTGTTGTTACCAAGCCTCAACCAACCCCCA
genomic: TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGgtattgccat ... ttccttgcagTTGTTGTTCCAGCTCCTAAGCCTGTTGTTACCAAGCCTCAACCAACCCCCA
EST: gi|7591247|gb|AW706984.1|AW706984
EST:     TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTACCAG                         TTGTTGTTCCAGCTGCTAAGCCTGTTGTTACCAAGCCT
genomic: TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGgtattgccat ... ttccttgcagTTGTTGTTCCAGCTCCTAAGCCTGTTGTTACCAAGCCT
EST: gi|27426839|gb|CA938359.1|CA938359
EST:     TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAG                         TTGTTGTTCCAGCTCCTAAGCCTGTTGTTACCAAGCCTCAACCAACCCCCA
genomic: TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGgtattgccat ... ttccttgcagTTGTTGTTCCAGCTCCTAAGCCTGTTGTTACCAAGCCTCAACCAACCCCCA
EST: gi|13789257|gb|BG651848.1|BG651848
EST:     CTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAG                         TTGTTGTTCCAGCTCCTAAGCCTGTTGTTACCAAGCCTCAACCAACCCCCA
genomic: CTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGgtattgccat ... ttccttgcagTTGTTGTTCCAGCTCCTAAGCCTGTTGTTACCAAGCCTCAACCAACCCCCA
EST: gi|14991586|gb|BI317259.1|BI317259
EST:     TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAG                         TTGTTGTTCCAGCTCCTAAGCCTGTTGTTACCAAGCCTCAACCAACCCCCA
genomic: TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGgtattgccat ... ttccttgcagTTGTTGTTCCAGCTCCTAAGCCTGTTGTTACCAAGCCTCAACCAACCCCCA
EST: gi|192297433|gb|FG992467.1|FG992467
EST:     TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAG                         TTGTTGTTCCAGCTCCTAAGCCTGTTGTTACCAAGCCTCAACCAACCCCCA
genomic: TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGgtattgccat ... ttccttgcagTTGTTGTTCCAGCTCCTAAGCCTGTTGTTACCAAGCCTCAACCAACCCCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaattcttgtactgatgataatatagtaatcagctttagttacttccttgcagTTGTTGTTCCAGCTCCTAAGCCTGTTGTTACCAAGCCTCAACCAACCCCCAGTCCCAAGACAACTCCACCTCCAG
           tactgat  putative branch site (score: 2)
                                         ttacttcctt  putative PPT
                atgataatatagtaat  TA-rich tract