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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtattatctcttcaatcgaatagaggtaataatgtaaaattcatcgtttctgatctttagtgtaatccctgcagGTATATCCAACTCATTTGGATTCGGTGGACACAATTCAGTAGTTGTCTTTGCCCCATTCAGGCCATAAGTAGAATTCAAACTCAACCTGAGTATTTCTTT

Basic information

species Glycine max
transcript GLYMA05G36690.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36690.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S201_89V6.1 (Physcomitrella patens), 3'ss of exon 7
-----------gtatgtattatctcttcaatcgaatagaggtaataat-gtaaa-attcatcgtttctgatctttagtgtaatccc---------tgcagGTATATCCAACTCATTTGGATTCGGTGGACACAATTCAGTAGTTGTCTTTGCCCCATTCAGGCCATAAGTAGAATTCAAACTCAACCTGAGTATTTCTTT---
            | | ||       | || | ||    |  ||||  | |     |  | |  | | |  | | || | ||  | |         ||||| ||| || ||||||||||| |||||||||||||||||    ||||| || || || | |||||| | |  |     |  ||| ||  |   | ||  |||   
acagtgtatctctgtttaggcagattacagttgagctcaattaattgttgcgcgtacccgtattgtttactttctaatatatccacactgtgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCGCTCCTTACAGGCCTTGAAGAAG---CGCACTAAAGATTCCTGTTATTTTCAC

upper sequence: GLYMA05G36690.1 (Glycine max), 3'ss of exon 7
lower sequence: EFJ32129 (Selaginella moellendorffii), 3'ss of exon 6
gtatgtattatctcttcaatcg-aatagaggtaataatgtaaaattcatcgtttctgatctttagtgtaa--tccctgcagGTATATCCAACTCATTTGGATTCGGTGGACACAATTCAGTAGTTGTCTTTGCCCCATTCAGGCCATAAGTAGAATTCAAACTCAACCTGAGTATTTCTTT
               | | ||| |||    ||     | |     ||   | |  ||  ||   ||  ||  |   ||||| ||| || ||||| ||||||||||||||||||||||| || |||||||| || ||||||| ||| | |                                
--------------gtgagtcgcaatttgcgtttctctct----ctcgaagctagtgtgctcacgttcaaattttgtgcagCTATTTCGAACTCGTTTGGATTCGGTGGACACAATTCCGTCGTTGTCTTCGCTCCATTCAAGCCTTGA--------------------------------

upper sequence: GLYMA05G36690.1 (Glycine max), 3'ss of exon 7
lower sequence: EFJ37714 (Selaginella moellendorffii), 3'ss of exon 6
gtatgtattatctcttcaatcgaatagaggtaataatgtaaaattcatcgtttctgatctttagtgtaa--tccctgcagGTATATCCAACTCATTTGGATTCGGTGGACACAATTCAGTAGTTGTCTTTGCCCCATTCAGGCCATAAGTAGAATTCAAACTCAACCTGAGTATTTCTTT
               | | ||| | |   ||  |  | |     ||   | |  ||  ||   |   ||  |   ||||| ||| || ||||| ||||||||||||||||||||||| || |||||||| || ||||||| ||| | |                                
--------------gtaagtcgca-atttgtgtttttctctctctcgaagctagtgtgctcacgctcaaattttgtgcagCTATTTCGAACTCGTTTGGATTCGGTGGACACAATTCCGTTGTTGTCTTCGCTCCATTCAAGCCTTGA--------------------------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagaggtaataatgtaaaattcatcgtttctgatctttagtgtaatccctgcagGTATATCCAACTCATTTGGATTCGGTGGACACAATTCAGTAGTTGTCTTTGCCCCATTCAGGCCATAAGTAGAATTCAAACTCAACCTGAGTATTTCTTT
                            ttctgat  putative branch site (score: 3)
                                              tccctgc  putative PPT
       taataatgtaaaattc  TA-rich tract