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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatataattttaattttaataatgaggatattagacttctgtgtttaggaatataactgagcttcatgcacaaatacatacttaatcactgttgatatttgacatctgtgattgtgaaaattgatttcaccaaagtagcaaatgcatcctgattatccacgcagGAAATTAGAAGGCGTCGTCTCAAAGTTGCAGTTGTAGGAATCCCCAAAACCATAGATAATGACATCCCG

Basic information

species Glycine max
transcript GLYMA05G36050.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36050.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 7
gtatatataattttaattttaataatgaggatattagacttctgtgtttaggaatataactgagcttcatgcacaaatacatacttaatcactgttgatatt--tgacatctgtga--ttgtgaaaattgatttca--ccaaagta-------gcaaatgcatcctg-----------attatccacgcagGAAATTAGAAGGCGTCGTCTCAAAGTTGCAGTTGTAGGAATCCCCAAAACCATAGATAATGACATCCCG
       |||||||| || ||| ||   | ||||   |  ||   ||||  ||| ||     |  |  ||  || | | | |  ||      | |    | |  ||   | |||||  ||    ||  |  |||    | ||| |        | |  || | |||             |||     ||||||||||  ||||||| |||| |||||||||||||  ||||| |||||||| || ||||||||||| |||
------gtaattttatttgtaa-aactggaatatcgtaagtcatagtttgagaa-atgctgcatataaatttaccagttcctttttctctgttctcagaaatcctgctgtttgtgacatttcctaagctatttttgggctaaaatgatatgctgtagctgaaccctattgaactgattgttaattgtgcagGAAATTCAAAGGCGTGGTCTAAAAGTTGCAGTTGCTGGAATTCCCAAAACAATTGATAATGACATTCCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattgtgaaaattgatttcaccaaagtagcaaatgcatcctgattatccacgcagGAAATTAGAAGGCGTCGTCTCAAAGTTGCAGTTGTAGGAATCCCCAAAACCATAGATAATGACATCCCG
                                     tcctgat  putative branch site (score: 3)
       aaaattgattt  TA-rich tract