1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ctaagcattttatgtgctccctctcttcccccaaaaaatgtattcttttgattgttcgtaaattgtatcaccttaacattgttggttttatcacatgcagATCAAAATGTTCTGAATGAATATCCACAAGTTCATGAAATTTCAGCATTCAACAATATTTACAATGACACTGGCATTTTTGGTATCCAAGTTACAACA
species | Glycine max |
transcript | GLYMA05G36040.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGATCATTCTCAGCTGGTGGACCTGGTAAAGGGATGTATTCACGGCTAT ATCAAAATGTTCTGAATGAATATCCACAAGTTCATGAAATTTCAGCATTCAEST: gi|58017426|gb|CX704168.1|CX704168
genomic: TGGATCATTCTCAGCTGGTGGACCTGGTAAAGGGATGTATTCACGGCTATgtaagttatt ... tcacatgcagATCAAAATGTTCTGAATGAATATCCACAAGTTCATGAAATTTCAGCATTCA
EST: TGGATCATTCTCAGCTGGTGGACCTGGTAAAGGGATGTATTCACGGCTAT ATCAAAATGTTCTGAATGAATATCCACAAGTTCATGAAATTTCAGCATTCAEST: gi|58020763|gb|CX707505.1|CX707505
genomic: TGGATCATTCTCAGCTGGTGGACCTGGTAAAGGGATGTATTCACGGCTATgtaagttatt ... tcacatgcagATCAAAATGTTCTGAATGAATATCCACAAGTTCATGAAATTTCAGCATTCA
EST: TGGATCATTCTCAGCTGGTGGACCTGGTAAAGGGATGTATTCACGGCTAT ATCAAAATGTTCTGAATGAATATCCACAAGTTCATGAAATTTCAGCATTCA
genomic: TGGATCATTCTCAGCTGGTGGACCTGGTAAAGGGATGTATTCACGGCTATgtaagttatt ... tcacatgcagATCAAAATGTTCTGAATGAATATCCACAAGTTCATGAAATTTCAGCATTCA
ttttgattgttcgtaaattgtatcaccttaacattgttggttttatcacatgcagATCAAAATGTTCTGAATGAATATCCACAAGTTCATGAAATTTCAGCATTCAACAATATTTACAATGACACTGGCATTTTTGGTATCCAAGTTACAACA
ccttaac putative branch site (score: 3)
ttttatc putative PPT
taaattgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaagcattttatgtgctccctctcttcccccaaaaaatgtattcttttgattgttcgtaaattgtatcaccttaacattgttggttttatcacatgcagATCAAAATGTTCTGAATGAATATCCACAAGTTCATGAAATTTCAGCATTCAACAATATTTACAATGACACTGGCATTTTTGGTATCCAAGTTACAACA
ctaagca
- - - - - - - - ctccctc
- - - - - - - - - - - - -ttccccc
- - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttggtt