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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatctgttttttttttctttaattttttaaaggtgcaaactgacaaactggccctcggcacatggaagttctaaatgttgataaaaatgtctttcagTTGAATTTTACATTACAAGATGGATTAGAAGCTGTGCGGATTCTTTTGCTTGAGGGATTTGATAAAAGTGCAACATTTGTTAATAGTGCCAAAAAGATAG

Basic information

species Glycine max
transcript GLYMA05G35220.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G35220.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G18440.1 (Arabidopsis thaliana), 3'ss of exon 7
gtatgtatctgttttttttttctttaattttttaaaggtgcaaactgacaaactggccctcggcacatggaagttctaaatgttgataaaaatgtctttcagTTGAATTTTACATTACAAGATGGATTAGAAGCTGTGCGGATTCTTTTGCTTGAGGGATTTGATAAAAGTGCAACATTTGTTAATAGTGCCAAAAAGATAG
    |||   |    ||| | |  ||||| | | ||     ||| |  || |            ||||       || | ||||  |      || || |||||| ||   ||||| |||   || ||||| ||  |  ||||||||||||||||||| ||  | ||||||||||||||||| || | |   |||   || |
----gtagaagcagatttatcccataattatctcaa-----aaaatttcaga---------aagacataa----cctgattgtttttg-----gttttgcagTTGGATCACACATTCCAAACCGGGTTAGAGGCAATAAGGATTCTTTTGCTTGAGGGGTTCAACAAAAGTGCAACATTTGTCAACACTCGAAAATCTATGG

upper sequence: GLYMA05G35220.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv17s0000g03980.t01 (Vitis vinifera), 3'ss of exon 7
gtatgtatctgttttttttttctttaattttttaaaggtgcaaactgacaaactggccctcggcacatggaagttctaaatgtt-gataaaaatgtcttt-cagTTGAATTTTACATTACAAGATGGATTAGAAGCTGTGCGGATTCTTTTGCTTGAGGGATTTGATAAAAGTGCAACATTTGTTAATAGTGCCAAAAAGATAG
|||||||         ||  || |  |  |  || ||  |  |||  |  || |||   | ||          ||||| |||||  | |||  ||||||| |||||| |||| ||||| ||| ||||  | ||||||||||||||||||||||||||||||||| ||||||| ||||  ||||| || | |||||||    | |
gtatgta-----aaacttgctcatgcacctactagaga-gagaacaaaataaatgggtgttgg---------attctagatgtttaacaaaggtgtcttttcagTTGGATTTCACATTTCAAAATGGTGTGGAAGCTGTGCGGATTCTTTTGCTTGAGGGATTTAATAAAAGCGCAAGTTTTGTGAACACTGCCAAATCCTTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6483212|gb|AW202390.1|AW202390
EST:     ACCCTGTAGCTTTTGTTCTTCGCACCTTCACTAAACATGAAAGGGAAGAG                         TTGAATTTTACATTACAAGATGGATTAGAAGCTGTGCGGATTCTTTTGCTT
genomic: ACCCTGTAGCTTTTGTTCTTCGCACCTTCACTAAACATGAAAGGGAAGAGgtatgtatct ... tgtctttcagTTGAATTTTACATTACAAGATGGATTAGAAGCTGTGCGGATTCTTTTGCTT
EST: gi|151403649|gb|EV273459.1|EV273459
EST:     ACCCTGTAGCTTTTGTTCTTCGCACCTTCACTAAACATGAAAGGGAAGAG                         TTGAATTTTACATTACAAGATGGATTAGAAGCTGTGCGGATTCTTTTGCTT
genomic: ACCCTGTAGCTTTTGTTCTTCGCACCTTCACTAAACATGAAAGGGAAGAGgtatgtatct ... tgtctttcagTTGAATTTTACATTACAAGATGGATTAGAAGCTGTGCGGATTCTTTTGCTT
EST: gi|192307382|gb|FK001970.1|FK001970
EST:     ACCCTGTAGCTTTTGTTCTTCGCACCTTCACTAAACATGAAAGGGAAGAG                         TTGAATTTTACATTACAAGATGGATTAGAAGCTGTGCGGATTCTTTTGCTT
genomic: ACCCTGTAGCTTTTGTTCTTCGCACCTTCACTAAACATGAAAGGGAAGAGgtatgtatct ... tgtctttcagTTGAATTTTACATTACAAGATGGATTAGAAGCTGTGCGGATTCTTTTGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaaactggccctcggcacatggaagttctaaatgttgataaaaatgtctttcagTTGAATTTTACATTACAAGATGGATTAGAAGCTGTGCGGATTCTTTTGCTTGAGGGATTTGATAAAAGTGCAACATTTGTTAATAGTGCCAAAAAGATAG
                                             tgtctttc  CT-rich tract
                             taaatgttgataaaaa  TA-rich tract