1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...aacaagcaatcttgattttaattagataatcacatgttctatattcttatgtgcttctactgattcaatcctttcttaccccatgattgaaattttgcagGTCAATTTTTGATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTCACATTCTG
species | Glycine max |
transcript | GLYMA05G34790.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTGATGTTGAGGTTTTTGATTCAGCAAGTGATTATATAAAATTGATGAA GTCAATTTTTGATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTEST: gi|151396774|gb|EV266647.1|EV266647
genomic: TTTGATGTTGAGGTTTTTGATTCAGCAAGTGATTATATAAAATTGATGAAgtaagattct ... aattttgcagGTCAATTTTTGATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATT
EST: TTTGATGTTGAGGTTTTTGATTCAGCAAGTGATTATATAAAATTGATGAA GTCAATTTTTGATTTTGAATCTAEST: gi|6567342|gb|AW234953.1|AW234953
genomic: TTTGATGTTGAGGTTTTTGATTCAGCAAGTGATTATATAAAATTGATGAAgtaagattct ... aattttgcagGTCAATTTTTGATTTTGAATCTA
EST: TTTGATGTTGAGGTTTTTGATTCAGCAAGTGATTATATAAAATTGATGAA GTCAATTTTTGATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTEST: gi|10845957|gb|BF068962.1|BF068962
genomic: TTTGATGTTGAGGTTTTTGATTCAGCAAGTGATTATATAAAATTGATGAAgtaagattct ... aattttgcagGTCAATTTTTGATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATT
EST: TTTGATGTTGAGGTTTTTGATTCAGCAAGTGATTATATAAAATTGATGAA GTCAATTTTTGATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATT
genomic: TTTGATGTTGAGGTTTTTGATTCAGCAAGTGATTATATAAAATTGATGAAgtaagattct ... aattttgcagGTCAATTTTTGATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATT
cttatgtgcttctactgattcaatcctttcttaccccatgattgaaattttgcagGTCAATTTTTGATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTCACATTCTG
ttcttac putative branch site (score: 2)
atgattgaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaagcaatcttgattttaattagataatcacatgttctatattcttatgtgcttctactgattcaatcctttcttaccccatgattgaaattttgcagGTCAATTTTTGATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTCACATTCTG
-acaagca
- - - - - - - - - - - - - - - - catgttc
- - - - - - - - - - - - - - - - - - - - - - - - - -tgcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgattc