1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgtgtgttggtaccttttcccattttttttaattaatatgttatactaaattgacagatatgacttgttattcaagcttctgatggcacttttttgtgtttggcactataatgtacttgtcaccaatgctctcgttgcctgtgaacctactgacttgaaaacatttttaacttttgttcttttttgtgcctggtacagGAGTCCTTACTTGCTATGAATAAGCTTAGGCAAGAGGTGGAGTTAGAGAAGAGTAGAGCAAAACTGGATAGCCGTAATTGTGAAAAAGACTTAGAGGTGT
species | Glycine max |
transcript | GLYMA05G34400.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAAATGTATCCAGGGCTTCTCCAGCAACAAAAGTTACAACTTTAACAAAG GAGTCCTTACTTGCTATGAATAAGCTTAGGCAAGAGGTGGAGTTAGAGAAGEST: gi|193430529|gb|FK396359.1|FK396359
genomic: GAAATGTATCCAGGGCTTCTCCAGCAACAAAAGTTACAACTTTAACAAAGgtgtgtgttg ... cctggtacagGAGTCCTTACTTGCTATGAATAAGCTTAGGCAAGAGGTGGAGTTAGAGAAG
EST: GAAATGTATCCAGGGCTTCTCCAGCAACAAAAGTTACAACTTTAACAAAG GAGTCCTTACTTGCTTATGAATAAGCTTAGGCAAGAGGTGGAGTTAGAGAAEST: gi|151406090|gb|EV275905.1|EV275905
genomic: GAAATGTATCCAGGGCTTCTCCAGCAACAAAAGTTACAACTTTAACAAAGgtgtgtgttg ... cctggtacagGAGTCCTTACTTGCT-ATGAATAAGCTTAGGCAAGAGGTGGAGTTAGAGAA
EST: GAAATGTATCCAGGGCTTCTCCAGCAACAAAAGTTACAACTTTAACAAAG GAGTCCTTACTTGCTATGAATAAGCTTAGGCAAGAGGTGGAGTTAGAGAAG
genomic: GAAATGTATCCAGGGCTTCTCCAGCAACAAAAGTTACAACTTTAACAAAGgtgtgtgttg ... cctggtacagGAGTCCTTACTTGCTATGAATAAGCTTAGGCAAGAGGTGGAGTTAGAGAAG
aacctactgacttgaaaacatttttaacttttgttcttttttgtgcctggtacagGAGTCCTTACTTGCTATGAATAAGCTTAGGCAAGAGGTGGAGTTAGAGAAGAGTAGAGCAAAACTGGATAGCCGTAATTGTGAAAAAGACTTAGAGGTGT
cttttgttcttttttg CT-rich tract
aaaacatttttaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtgttggtaccttttcccattttttttaattaatatgttatactaaattgacagatatgacttgttattcaagcttctgatggcacttttttgtgtttggcactataatgtacttgtcaccaatgctctcgttgcctgtgaacctactgacttgaaaacatttttaacttttgttcttttttgtgcctggtacagGAGTCCTTACTTGCTATGAATAAGCTTAGGCAAGAGGTGGAGTTAGAGAAGAGTAGAGCAAAACTGGATAGCCGTAATTGTGAAAAAGACTTAGAGGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA