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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatataaatatcattcacccgtctttgtaatgcaatgtaatgtttaattttcttgcgataacacgggattttaatttcagTAATTTCATCTCCTGAGGGCAAGAGGAGCATGATGAAACTTGCTCAAAGGATGGTCACCGATTTTTGTGCCAGCATTAGCACATCAAGTGGCCATCGATG

Basic information

species Glycine max
transcript GLYMA05G33520.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G33520.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 7
----------gtatataaatatcattcacccgtctttgtaatgcaatgt------aatgtttaattttcttgcgataacac-----gggattttaattt--cagTAATTTCATCTCCTGAGGGCAAGAGGAGCATGATGAAACTTGCTCAAAGGATGGTCACCGATTTTTGTGCCAGCATTAGCACATCAAGTGGCCATCGATG
            | | ||| |  |   |     || |  ||   || ||      |||| || ||  ||    |  || ||      |   |||  |||  |||| ||| |||||||||| |||||||| ||||||||||||||||| || |||||||||| | |||| ||||| ||||| ||||| || | ||| || |||||
gtacttcagataaaaaaaaaaggacaaaaaaacctctcgaagaaaacgttctcctaatgcttgatcctcaaatgcaaatactaacaagctctttggttttacagTGATTCCATCTCCTGATGGCAAGAGAAGCATGATGAAACTTGCCCAGAGGATGGTCAACAATTTCTGTGCAAGCATCAGCACCTCCAATGGACACCGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaatgcaatgtaatgtttaattttcttgcgataacacgggattttaatttcagTAATTTCATCTCCTGAGGGCAAGAGGAGCATGATGAAACTTGCTCAAAGGATGGTCACCGATTTTTGTGCCAGCATTAGCACATCAAGTGGCCATCGATG
                                           ttttaat  putative branch site (score: 3)
        aatgtaatgtttaatt  TA-rich tract