Sequence
atgc intronic sequence ATGC exonic sequencegtgggtaatctgcttctgttacttattttgcttgtttcctttctgcgtgttttgtaaataccaagtggacatgtagGTTCGGATTGTCCTGGAAGGTGTTGATAAGTTCAACAATTTGATTGGGTCAGTGTATTATCCTGATGGTGACTCAGCAAAAGACCTGGCATTGGAGCTTG
Basic information
species | Glycine max |
transcript | GLYMA05G33320.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G33320.1 (Glycine max), 3'ss of exon 7
lower sequence: AT5G61780.1 (Arabidopsis thaliana), 3'ss of exon 7
gtgggtaatctgcttctgttacttattttgcttgtttcctttctgcgtgttttgtaaataccaagtggac------atgtagGTTCGGATTGTCCTGGAAGGTGTTGATAAGTTCAACAATTTGATTGGGTCAGTGTATTATCCTGATGGTGACTCAGCAAAAGACCTGGCATTGGAGCTTG
|| | | | | | | ||| || | || || | | ||| | || | || | || ||||||| ||||| || ||||| ||||| |||||||||||| ||||||||||||| || ||| | ||||| || ||| |||||| ||| |||||||| |
gtaaggaggtt-ttacaacaaattaacttacacgtatctgtatttgacatttagatgatctaagttgagctggattgtgcagGTTCGTATTGTTCTTGAAGGCGTTGACAAGTTCAACAATCTGATTGGGTCAGTATACTATTCCGATGGGGATACAGTTAAAGACTTGGGTTTGGAGCTGG
upper sequence: GLYMA05G33320.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv00s0283g00020.t01 (Vitis vinifera), 3'ss of exon 7
gtgggtaatctgcttctgttacttattttgcttgtttcctttctgcgtgttttg---------taaataccaagtggacatgtagGTTCGGATTGTCCTGGAAGGTGTTGATAAGTTCAACAATTTGATTGGGTCAGTGTATTATCCTGATGGTGACTCAGCAAAAGACCTGGCATTGGAGCTTG
||| |||| | | | | | | ||| ||| | || ||| || || || | | | |||| || || || | ||||||||||| || || ||||||||| || ||||| |||||||| |||||||| |||||||| ||||| ||| |||||||||
gtgagtaaatttatcttatcaaatgacttgtcatttttgcatttgattgtctttagatggtttcaattaatggtggaatttacagGTCCGTATCGTATTAGAAGGTGTTGACAAATTTGGCAATTTGATCGGTTCAGTATATTATCCCGATGGTGAATCAGCAAAGGACCTAGCACTGGAGCTTG
upper sequence: GLYMA05G33320.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv14s0068g00720.t01 (Vitis vinifera), 3'ss of exon 6
-------------------gtgggtaatctgcttctgttactt-attttgcttgtttcctttctgcgtgttttgtaaataccaag-tggaca-tgtagGTTCGGATTGTCCTGGAAGGTGTTGATAAGTTCAACAATTTGATTGGGTCAGTGTATTATCCTGATGGTGACTCAGCAAAAGACCTGGCATTGGAGCTTG
| | | | | ||| |||| ||| ||| | || || | | | || | | || | |||| | ||||| || ||||| ||||| || ||||| || | | ||| | ||||| ||||||||||||||||||||||| |||||||| || |||||| |||||||||
gtcagtaaatttcttctttgagaatgaattccttgtgtttctttgtttcgttttatttttatttttacacgttctcagcttcatgctggattctatagGTACGCATTGTTCTGGAGGGAGTTGACAAATATAGCAACCTAATTGGTTCAGTGTATTATCCTGATGGTGATTCAGCAAAGGATCTGGCACTGGAGCTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttattttgcttgtttcctttctgcgtgttttgtaaataccaagtggacatgtagGTTCGGATTGTCCTGGAAGGTGTTGATAAGTTCAACAATTTGATTGGGTCAGTGTATTATCCTGATGGTGACTCAGCAAAAGACCTGGCATTGGAGCTTG
ttttgtaaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgggtaatctgcttctgttacttattttgcttgtttcctttctgcgtgttttgtaaataccaagtggacatgtagGTTCGGATTGTCCTGGAAGGTGTTGATAAGTTCAACAATTTGATTGGGTCAGTGTATTATCCTGATGGTGACTCAGCAAAAGACCTGGCATTGGAGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT