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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgttatttctttttaatatttgttttttggaagtgacatgagtggaaagagggtcattgtgagaggtcctttcttttgtttggttctgattttttgctaagtattcagaactgagttgattttctacttgattcttccctttctcacgtagGTAATGACTCCAAACCCAGATTGTGCATCAGTAGATACAACGATACTGGATTCTCTGCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAG

Basic information

species Glycine max
transcript GLYMA05G32930.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G32930.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G177485_T01 (Zea mays), 3'ss of exon 2
gttgttatttctttttaatatttgttttttggaagtgacatgagtggaaagagggtcattgtgagaggtcctttcttttgtttggttctgattttttgctaagt-attcagaactgagttgattttctacttgattcttccctttctcacgtagGTAATGACTCCAAACCCAGATTGTGCATCAGTAGATACAACGATACTGGATTCTCTGCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAG
                                                                   ||   ||||   | ||  |  |  || ||   |||||  || |    ||  || ||  |  ||   ||   | |  || |||   ||||||||||| || |||| ||||||||  || | || ||||| || || ||| | || ||||| ||||||||||| |||||||| ||| |||||||  | |
-------------------------------------------------------------------gtttcttctgcagatttatgatttttattccataagttgttgaattttgtattcatcctagacacaatgtctactattttcatccagGTAATGACTGCACACCCCGATTGTGCTACATTGGACACAACAATCCTTGATGCACTACATATCATGCATGATGGCAAATTCTTGCATATTCCTGTTCTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaagtattcagaactgagttgattttctacttgattcttccctttctcacgtagGTAATGACTCCAAACCCAGATTGTGCATCAGTAGATACAACGATACTGGATTCTCTGCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAG
                                            ttctcac  putative branch site (score: 2)
                       ttttctacttgattct  CT-rich tract
                   ttgatttt  TA-rich tract