1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...attattatttataagtatggtggttggctttttgtattgtattagttattggttatttgtcttttgagcatgatggtgtaattttccctttctcacatagGTTATTGTAAAGAGTGGTGATGATTGCAGGCAGGAGCATCTGGCTGTTCAACTTATTTCTCACTTCTATG
species | Glycine max |
transcript | GLYMA05G32460.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TATGCAAGGCTTCCATATATGGGAAGTTACCTGGTTGGGACTTGCGATCT GTTATTGTAAAGAGTGGTGATGATTGCAGGCAGGAGCATCTGGCTGTTCAAEST: gi|208083280|gb|GD883048.1|GD883048
genomic: TATGCAAGGCTTCCATATATGGAAAGTTACATGGTTGGGACTTGCGATCTgtaagtgcat ... tctcacatagGTTATTGTAAAGAGTGGTGATGATTGCAGGCAGGAGCATCTGGCTGTTCAA
EST: TATGCAAGGCTTCCATATATGGAAAGTTACATGGTTGGGACTTGCGATCT GTTATTGTAAAGAGTGGTGATGATTGCAGGCAGGAGCATCTGGCTGTTCAAEST: gi|208097950|gb|GD893503.1|GD893503
genomic: TATGCAAGGCTTCCATATATGGAAAGTTACATGGTTGGGACTTGCGATCTgtaagtgcat ... tctcacatagGTTATTGTAAAGAGTGGTGATGATTGCAGGCAGGAGCATCTGGCTGTTCAA
EST: TATGCAAGGCTTCCATATATGGAAAGTTACATGGTTGGGACTTGCGATCT GTTATTGTAAAGAGTGGTGATGATTGCAGGCAGGAGCATCTGGCTGTTCAA
genomic: TATGCAAGGCTTCCATATATGGAAAGTTACATGGTTGGGACTTGCGATCTgtaagtgcat ... tctcacatagGTTATTGTAAAGAGTGGTGATGATTGCAGGCAGGAGCATCTGGCTGTTCAA
ttattggttatttgtcttttgagcatgatggtgtaattttccctttctcacatagGTTATTGTAAAGAGTGGTGATGATTGCAGGCAGGAGCATCTGGCTGTTCAACTTATTTCTCACTTCTATG
ttctcac putative branch site (score: 2)
ttttccctttctcaca CT-rich tract
tgtaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attattatttataagtatggtggttggctttttgtattgtattagttattggttatttgtcttttgagcatgatggtgtaattttccctttctcacatagGTTATTGTAAAGAGTGGTGATGATTGCAGGCAGGAGCATCTGGCTGTTCAACTTATTTCTCACTTCTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - tggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgat