Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaataaattctcttatttgtaaaaatgacattaccatggttaaaaactgtttcactggacaatttcatatttttacatgctcctcagGTTATCAAGCAACGAATGCAAACTGGCCAGTTTACTTCAGCTTCTGGTGCTGTTCGCTTTATTGCTTCTAAGGAAGGCTTTAAAGGATTTTATGCT

Basic information

species Glycine max
transcript GLYMA05G31870.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193448901|gb|FK411120.1|FK411120
EST:     GGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACCGAG                         GTTATCAAGCAACGAATGCAAACTGGCCAGTTTACTTCAGC
genomic: GGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACCGAGgtaaataaat ... tgctcctcagGTTATCAAGCAACGAATGCAAACTGGCCAGTTTACTTCAGC
EST: gi|7686659|gb|AW757316.1|AW757316
EST:     CANGTGCCATAGGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACCGAG                         GTTATCAAGCAACGAATGCAAACTGGCCAGTTTACTTCAGCTTCTGGTGCT
genomic: CAGGTGCCATAGGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACCGAGgtaaataaat ... tgctcctcagGTTATCAAGCAACGAATGCAAACTGGCCAGTTTACTTCAGCTTCTGGTGCT
EST: gi|120528780|gb|EH256914.1|EH256914
EST:     CAGGTGCCATAGGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACCGAG                         GTTATCAAGCAACGAATGCAAACTGGCCAGTTTACTTCAGCTTCTGGTGCT
genomic: CAGGTGCCATAGGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACCGAGgtaaataaat ... tgctcctcagGTTATCAAGCAACGAATGCAAACTGGCCAGTTTACTTCAGCTTCTGGTGCT
EST: gi|7686699|gb|AW757347.1|AW757347
EST:     CAAGTGCCATAAGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACCGAG                         GTTATCAAGCAACGAATGCAAACTGGC
genomic: CAGGTGCCATAGGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACCGAGgtaaataaat ... tgctcctcagGTTATCAAGCAACGAATGCAAACTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accatggttaaaaactgtttcactggacaatttcatatttttacatgctcctcagGTTATCAAGCAACGAATGCAAACTGGCCAGTTTACTTCAGCTTCTGGTGCTGTTCGCTTTATTGCTTCTAAGGAAGGCTTTAAAGGATTTTATGCT
                                             tgctcctc  CT-rich tract
                            aatttcatatttttac  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaataaattctcttatttgtaaaaatgacattaccatggttaaaaactgtttcactggacaatttcatatttttacatgctcctcagGTTATCAAGCAACGAATGCAAACTGGCCAGTTTACTTCAGCTTCTGGTGCTGTTCGCTTTATTGCTTCTAAGGAAGGCTTTAAAGGATTTTATGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA