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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagttctgtcctcactctctcaacaaacttagatgcaaaatgtcattacatttgactgacagttctccacgtgtgcagATTTTCTTGTGGATGCCTTGGACTATTCTCTATCTAAGTTGTGAGCTGATTGTGCATCTTGCTAGCATGAAATGAAATCTTCGACAATGGAGTCAAATTA

Basic information

species Glycine max
transcript GLYMA05G31630.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209726399|gb|BW659964.1|BW659964
EST:     CAATGTTTTCAGGATCAAGCCACCAATGTGTTTCTCCAAAGATGATGCAG                         ATTTTCTTGTGGATGCCTTGGACTATTCTCTATCTAAGTTGTGAGCTGATT
genomic: CAATGTTTTCAGGATCAAGCCACCAATGTGTTTCTCCAAAGATGATGCAGgtatagttct ... acgtgtgcagATTTTCTTGTGGATGCCTTGGACTATTCTCTATCTAAGTTGTGAGCTGATT
EST: gi|208153448|gb|GD951393.1|GD951393
EST:     CAATGTTTTCAGGATCAAGCCACCAATGTGTTTCTCCAAAGATGATGCAG                         ATTTTCTTGTGGATGCCTTGGACTATTCTCTATCTAAGTTGTGAGCTGATT
genomic: CAATGTTTTCAGGATCAAGCCACCAATGTGTTTCTCCAAAGATGATGCAGgtatagttct ... acgtgtgcagATTTTCTTGTGGATGCCTTGGACTATTCTCTATCTAAGTTGTGAGCTGATT
EST: gi|6726941|gb|AW311221.1|AW311221
EST:     CAATGTGTTTCTCTAAAGATGATGCAG                         ATTTTCTTGTGGATGCCTTGGACTATTCTCTATCTAAGTTGTGAGCTGATT
genomic: CAATGTGTTTCTCCAAAGATGATGCAGgtatagttct ... acgtgtgcagATTTTCTTGTGGATGCCTTGGACTATTCTCTATCTAAGTTGTGAGCTGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaacttagatgcaaaatgtcattacatttgactgacagttctccacgtgtgcagATTTTCTTGTGGATGCCTTGGACTATTCTCTATCTAAGTTGTGAGCTGATTGTGCATCTTGCTAGCATGAAATGAAATCTTCGACAATGGAGTCAAATTA
                              gactgac  putative branch site (score: 2)
                                       ttctccac  putative PPT
                     attacattt  TA-rich tract