1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagcaatgcacgaataatcttaacccttctcagattaacttttaattcttgttggtctaattttgtgttaacctgtagGATGTCTACAATGAAGCAGAGAACATAATCGCTAATGCTTTGACTGAGTGGGAAATAATTCTTTGCTCATCAACTACCATGGATTTAGTATGGGCGCAGG
species | Glycine max |
transcript | GLYMA05G30980.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTCAGCA-TTTGCCAAATGATTGGTTTCTCCCCCCAACGAGTCTGATACA GATGTCTACAATGAAGCAGAGAACATAATCGCTAATGCTTTGACTGAGTGGEST: gi|51336496|gb|CO980362.1|CO980362
genomic: GTCAGCATTTTGCCAAATGATTGGTCTCT-CCCCCAACGAGTCTGATACAgtaagcaatg ... taacctgtagGATGTCTACAATGAAGCAGAGAACATAATCGCTAATGCTTTGACTGAGTGG
EST: TGTCAGCATTTTGCCAAATGATTGGTCTCTCCCCCAACGAGTCTGATACA GATGTCTACAATGAAGCAGAGAACATAATCGCTAATGCTTTGACTGAGTGGEST: gi|8284179|gb|BE021738.1|BE021738
genomic: TGTCAGCATTTTGCCAAATGATTGGTCTCTCCCCCAACGAGTCTGATACAgtaagcaatg ... taacctgtagGATGTCTACAATGAAGCAGAGAACATAATCGCTAATGCTTTGACTGAGTGG
EST: ACGAGGTCTGATACA GATGTCTACAATGAAGCAGAGAACATAATCGCTAATGCTTTGACTGAGTGGEST: gi|254335755|gb|GR847283.1|GR847283
genomic: ACGA-GTCTGATACAgtaagcaatg ... taacctgtagGATGTCTACAATGAAGCAGAGAACATAATCGCTAATGCTTTGACTGAGTGG
EST: TGTCAGCATTTTGCCAAATGATTGGTTTCTCCCCCAACGAGTCTGATACA GATGTCTACAATGAAGCAGAGAACATAATCGCTAATGCTTTGACTGAGTGG
genomic: TGTCAGCATTTTGCCAAATGATTGGTCTCTCCCCCAACGAGTCTGATACAgtaagcaatg ... taacctgtagGATGTCTACAATGAAGCAGAGAACATAATCGCTAATGCTTTGACTGAGTGG
cccttctcagattaacttttaattcttgttggtctaattttgtgttaacctgtagGATGTCTACAATGAAGCAGAGAACATAATCGCTAATGCTTTGACTGAGTGGGAAATAATTCTTTGCTCATCAACTACCATGGATTTAGTATGGGCGCAGG
tgttaac putative branch site (score: 2)
attaacttttaattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaatgcacgaataatcttaacccttctcagattaacttttaattcttgttggtctaattttgtgttaacctgtagGATGTCTACAATGAAGCAGAGAACATAATCGCTAATGCTTTGACTGAGTGGGAAATAATTCTTTGCTCATCAACTACCATGGATTTAGTATGGGCGCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA