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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattaagctgtctatatttctgtttaagatttttttttatcagctttgcagtatgttgcaatcatgctacttctctgtgtacattctgttatcaccatattacataactttagttcatttaattctgaaccagGGATTTTTCTACAGCTAATATGATAGGAGGAAAAGGTTTAAAGGGAAATTCCTGGCCTGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCAG

Basic information

species Glycine max
transcript GLYMA05G30770.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30770.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G028307_T01 (Zea mays), 3'ss of exon 6
gtgattaagctgtctatatttctgtttaagatttttttttatcagctttgcagtatgttgcaatcatgctacttctctgtgtacattctgttatcaccatattacataactttagttcattta-attctgaac-cagGGATTTTTCTACAGCTAATATGATAGGAGGAAAAGGTTTAAAGGGAAATTCCTGGCCTGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCAG
                             |  || |  | || || |||    ||  ||| ||   |  |  | |    |  |        ||  | | | || | ||  |||  | | |||  || ||  |  |||    ||  |||| ||||| | ||| || |  |  || ||    ||||  || ||||| || || |||||||| |||||||||||||| ||||||||| 
--------------------------attgcattatactcattagttttt--ataccttgtaaatgta-tgttgcctaataaa--------taagaacttgtttcgtactttttttccctttgcatactatatgcagTTCCTTCGCTACTGCTAAGAAGATTGGGGCCACTGGGTTGCGAGGAAGATCTTGGCCAGACTTAGACATGCTTCCATTTGGATGGCTTACTGATCCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16347895|gb|BI973490.1|BI973490
EST:     GATGACTGGGATTTATGGGAGGACGTCAAGGCTCATTTTGATGTAACAAG                         GGATTTTTCTACAGCTAATATGATAGGAGGAAAAGGTTTAAAGGGAAATTC
genomic: GATGACTGGGATTTATGGGAGGACGTCAAGGCTCATTTTGATGTAACAAGgtgattaagc ... tctgaaccagGGATTTTTCTACAGCTAATATGATAGGAGGAAAAGGTTTAAAGGGAAATTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacattctgttatcaccatattacataactttagttcatttaattctgaaccagGGATTTTTCTACAGCTAATATGATAGGAGGAAAAGGTTTAAAGGGAAATTCCTGGCCTGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCAG
                  atattacataacttta  TA-rich tract