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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttaaaatatttttctcttttcctatgataattggaaagattggaagctgaatcctattgcagttggcttcaatgaacagtgttctaagttttttccccctctttttgatggtaacagATCTAGGACATCAAACTGTACAGAGAATTGTCCGAGCTTCGGATCCTCTGCAGTCAATGCAGGAAATTAATCAAAACTTCCCTAGCATAGTTTCTTCCTT

Basic information

species Glycine max
transcript GLYMA05G30230.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30230.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G370162_T02 (Zea mays), 3'ss of exon 6
----------------------------------------gtatttaaaatat-ttttctcttttcctatgataattggaaagattggaagctgaatcctattgcagttggcttcaatgaacagtgttctaagttttttccccctctttttgatggta------acagATCTAGGACATCAAACTGTACAGAGAATTGTCCGAGCTTCGGATCCTCTGCAGTCAATGCAGGAAATTAATCAAAACTTCCCTAGCATAGTTTCTTCCTT
                                           |||| |  || |||| | || ||| |    |||     |  ||    |         ||||    || | ||| |    | | ||  |||    ||   | | | |   ||| |       |||||||| || ||||| || | |||| |||| || | ||| || || ||| | ||||||||||||||||| |||||||| ||||| || |||||||||||  |
gtattgttgcctacttgccataaatcgataggtgttcctcaggtttatatcatattttgttttgtccaacagcaatgcatcattttttttgtatgggaaaattgtgagtg-catcattctgtattatta-aagcacctttttcatttatggcatgctccacaccacagATCTGGGTCATCAGACAGCACAGCGAATCGTTCAAGCATCAGACCCTTTACAGTCAATGCAGGAAATCAATCAAAATTTCCCAAGTATAGTTTCTTCACT

upper sequence: GLYMA05G30230.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G71220.1 (Arabidopsis thaliana), 3'ss of exon 6
gtatttaaaatatttttctcttttcctatgataattggaaagattggaagctgaatcctattgcagttggcttcaatgaacagtgttctaagttttttccccctctttttgatggtaacagATCTAGGACATCAAACTGTACAGAGAATTGTCCGAGCTTCGGATCCTCTGCAGTCAATGCAGGAAATTAATCAAAACTTCCCTAGCATAGTTTCTTCCTT
                                                  ||    | | || |   ||| || |||  | | || | || || ||| |    |    ||  |   ||||||| ||||||| ||||| |  |||||||| ||||  || || |||||||||||||| ||||| ||||||||||||||||| |||||  |||||||||| ||
-----------------------------------------------gtactactgcatgtttcgcgtgg-tttaatagaaattggtata-gtgtttcctaatttacctttgttccaacagATTTAGGACACCAAACAGCGCAGAGAATAGTCCATGCCTCTGATCCTCTGCAGTCTATGCAAGAAATTAATCAAAACTTTCCTAGTGTAGTTTCTTCATT

upper sequence: GLYMA05G30230.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv12s0034g02230.t01 (Vitis vinifera), 3'ss of exon 7
---------------gtatttaaaatatttttctcttttcctatga-taattggaaagattggaagctgaatcctattgcagttggcttcaatgaacagtgtt-ctaagttttttccccctctttttgatggtaacagATCTAGGACATCAAACTGTACAGAGAATTGTCCGAGCTTCGGATCCTCTGCAGTCAATGCAGGAAATTAATCAAAACTTCCCTAGCATAGTTTCTTCCTT
               ||   | |||  | | |   ||    | | | |  |||  |  |||||    ||||   |||   | |||| || | |    |   |  || |  |||  |      |   |  |  |||||||| ||||||||||||||| |||||| || || |  || || |||||||||||||||||||| || || || ||||| ||||||||  |||||||||||||
gtatttatcatgactgttgatgaaaagtatatgatttggggtttaaatttttgtcactattggtca-tgaaaattatctgatttggattaattatttaaaataactgaaatttgcctaatgatgactttt--taacagATTTAGGACATCAAACTGCACAGAGGATAGTTCATGCCTCTGATCCTCTGCAGTCAATGCAAGAGATCAACCAAAATTTCCCTAGTGTAGTTTCTTCCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggcttcaatgaacagtgttctaagttttttccccctctttttgatggtaacagATCTAGGACATCAAACTGTACAGAGAATTGTCCGAGCTTCGGATCCTCTGCAGTCAATGCAGGAAATTAATCAAAACTTCCCTAGCATAGTTTCTTCCTT
                                        ttttgat  putative branch site (score: 4)
                          ttttttccccctcttt  CT-rich tract
                      taagtttttt  TA-rich tract