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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaaccaactgtcctgaaattttaagcttattttttcttcgagtgtggtgttgtttctatgaattgtgttcattttcgtaattcaattttcatctcatgggaacttcttctcagATGGTCTCAGATAGACAGAAGAAAGAATCTGCCCCTCCAGTAGGTATTTCTGAGAATGGCACAGAGAAAACAATGTACTTCTTGGCTGAA

Basic information

species Glycine max
transcript GLYMA05G29700.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15284843|gb|BI468734.1|BI468734
EST:     AGACTTTTCATTTAAGAGTTGCAGCTATTCTTGGTGAAATTGAAGCTGAG                         ATGGTCTCAGATAGACAGAAGAAAGAATCTGCCCCTCCAGTAGGTATTTCT
genomic: AGACTTTTCATTTAAGAGTTGCAGCTATTCTTGGTGAAATTGAAGCTGAGgtgagaacca ... ttcttctcagATGGTCTCAGATAGACAGAAGAAAGAATCTGCCCCTCCAGTAGGTATTTCT
EST: gi|193454456|gb|FK418755.1|FK418755
EST:     AGACTTTTCATTTAAGAGTTGCAGCTATTCTTGGTGAAATTGAAGCTGAG                         ATGGTCTCAGATAGACAGAAGAAAGA
genomic: AGACTTTTCATTTAAGAGTTGCAGCTATTCTTGGTGAAATTGAAGCTGAGgtgagaacca ... ttcttctcagATGGTCTCAGATAGACAGAAGAAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaattgtgttcattttcgtaattcaattttcatctcatgggaacttcttctcagATGGTCTCAGATAGACAGAAGAAAGAATCTGCCCCTCCAGTAGGTATTTCTGAGAATGGCACAGAGAAAACAATGTACTTCTTGGCTGAA
                                            cttcttctc  CT-rich tract
 taattcaattttcat  TA-rich tract