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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttctatcatagtaaaacaatatggaaataatactatcattactttatcatgtttacctacctgtgtagtttatatatttcctttgatttctatctttgcctttgcatttgcatttacagGAACTGATGGCCCTCTTGGAAAGAGATTAAATAACACAAGAACCAGCCAGGTAGTTGGGTGGGAGCCCAAGTACCTTAGCTTTGCTCGTTTTCTAGAGAG

Basic information

species Glycine max
transcript GLYMA05G26450.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8825955|gb|BE209685.1|BE209685
EST:     TCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACAAGTTTACTG                         GAACTGATGGCCCTCTTGGAA
genomic: TCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACAAGTTTACTGgtgagttcta ... gcatttacagGAACTGATGGCCCTCTTGGAA
EST: gi|120494805|gb|EH222972.1|EH222972
EST:     TCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACAAGTTTACTG                         GAACTGATGGCCCTCTTGGAAAGAGATTAAATAACACAAGAACCAGCCAGG
genomic: TCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACAAGTTTACTGgtgagttcta ... gcatttacagGAACTGATGGCCCTCTTGGAAAGAGATTAAATAACACAAGAACCAGCCAGG
EST: gi|209712191|gb|BW681397.1|BW681397
EST:     TCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACAAGTTTACTG                         GAACTGATGGCCCTCTTGGAAAGAGATTAAATAACACAAGAACCAGCCAGG
genomic: TCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACAAGTTTACTGgtgagttcta ... gcatttacagGAACTGATGGCCCTCTTGGAAAGAGATTAAATAACACAAGAACCAGCCAGG
EST: gi|8826056|gb|BE209848.1|BE209848
EST:     TCTGGTTAATAAAAGTGGGAAATTCANTAAAAAATTTGACAAGTTTACTG                         GGACTGATGGCCCTCTTGGAAAGAGATTAAATAACACAAGAACCAGCCANG
genomic: TCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACAAGTTTACTGgtgagttcta ... gcatttacagGAACTGATGGCCCTCTTGGAAAGAGATTAAATAACACAAGAACCAGCCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagtttatatatttcctttgatttctatctttgcctttgcatttgcatttacagGAACTGATGGCCCTCTTGGAAAGAGATTAAATAACACAAGAACCAGCCAGGTAGTTGGGTGGGAGCCCAAGTACCTTAGCTTTGCTCGTTTTCTAGAGAG
                ctttgat  putative branch site (score: 5)
 ttatatatttccttt  TA-rich tract