Sequence
atgc intronic sequence ATGC exonic sequencegtatgctttcattctttgctggaatgaaaattgattttggttggcagaatttacattgattttgtgttatttattccatcctacagGTTTTTCAGCAAATTCCTGGGACACTGTTGGTGAAAGGTTCATTACAAGACAGGAATTGTGCAGTATCAG
Basic information
species | Glycine max |
transcript | GLYMA05G26370.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G26370.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv03s0038g02100.t01 (Vitis vinifera), 3'ss of exon 6
gtatgctttcattctttgctggaatgaaaattgattt-tggttgg-----cagaatttacattgattttgt-----gttatttattccatcctacagGTTTTTCAGCAAATTCCTGGGACACTGTTGGTGAAAGGTTCATTACAAGACAGGAATTGTGCAGTATCAG
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gtatacctcc-ttgttggcttgaatacaatgccttctattgttagaaacctaaaacttacattgattgtatcatctgttcccctttttgttctttagGTTTTTCAGCAAATTCCTGGGACGCTTTTGGTGAGAGGATCATTAAAAGATAGAGAAAGCCCAGGCTCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254322768|gb|GR835590.1|GR835590EST: ATGGGTCGAGTTTGAATCTCTCTTCTGAGAGATTATGC-TTCGTATATCG GTTTTTCAGCAAATTCCTGGGACACTGTTGGTGAAAGGTTCATTACAAGAC
genomic: ATGGGTCGAGTTTGAATCTCTCTTCTGAGAGATTATGCTTTCGTATATCGgtatgctttc ... catcctacagGTTTTTCAGCAAATTCCTGGGACACTGTTGGTGAAAGGTTCATTACAAGAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgattttggttggcagaatttacattgattttgtgttatttattccatcctacagGTTTTTCAGCAAATTCCTGGGACACTGTTGGTGAAAGGTTCATTACAAGACAGGAATTGTGCAGTATCAG
cattgat putative branch site (score: 4)
ttccatcct putative PPT
aatttacattgatttt TA-rich tract