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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttatagacaattaacatgtataggttcctgcatagattagatgttgtgaatgtgtctttctgcttctaatcttctatacatgtaactggacttctgtagAAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAAAAGGAAAGTTTCTTGATGTTGTATCTGGTATTATTGTTACAAACCAGAA

Basic information

species Glycine max
transcript GLYMA05G26250.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193725059|gb|FK656049.1|FK656049
EST:     ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG                         AAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
EST: gi|193635346|gb|FK584757.1|FK584757
EST:     ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG                         AAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
EST: gi|31464708|gb|CD406721.1|CD406721
EST:     ATACCGTGTAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG                         AAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCCA
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
EST: gi|22931701|gb|BU548840.1|BU548840
EST:     ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG                         AAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
EST: gi|9440046|gb|BE440557.1|BE440557
EST:     ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG                         AAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTNTGGACTTTTCAA
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
EST: gi|193703135|gb|FK639637.1|FK639637
EST:     ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG                         AAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
EST: gi|22523485|gb|BU082296.1|BU082296
EST:     ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG                         AAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
EST: gi|254318154|gb|GR832322.1|GR832322
EST:     ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG                         AAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
EST: gi|193615633|gb|FK561510.1|FK561510
EST:     ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG                         AAGCTGGAGGTATTGCCATGGATGCTGC-GGGAA-CCTTTGGAC-TTTCAA
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
EST: gi|27427274|gb|CA938794.1|CA938794
EST:     CAGCATTGTTGTGACTG                         AAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
genomic: CAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
EST: gi|193492480|gb|FK455674.1|FK455674
EST:     ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG                         AAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
EST: gi|193451517|gb|FK421395.1|FK421395
EST:     ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG                         AAGCTGGAGGTATTGCCATGGATGCTGC-GGGAACCCTTTGGACTTTTCAA
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgaatgtgtctttctgcttctaatcttctatacatgtaactggacttctgtagAAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAAAAGGAAAGTTTCTTGATGTTGTATCTGGTATTATTGTTACAAACCAGAA
                                              cttctgt  CT-rich tract
                   ttctaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttatagacaattaacatgtataggttcctgcatagattagatgttgtgaatgtgtctttctgcttctaatcttctatacatgtaactggacttctgtagAAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAAAAGGAAAGTTTCTTGATGTTGTATCTGGTATTATTGTTACAAACCAGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - -catgtat
- - - - - - - - - - - - - tcctgca
- - - - - - - - - - - - - - - - - - - - gatgttg
- - - - - - - - - - - - - - - - - - - - - - - - gaatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtaa