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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttttttctgtctttgtttcttgtattttatattggtttatctgtactggcttcaattttgcctcttcattttttatttatttcttagttttctgtgcagCCTGATTCATTTTACTTAAATGTACTTCCTTTTGCTGAGGATGTGCGAGAGTTTCAATTCCCTTCCTTCACTAATTTCCCAGCATCGTGGCAACCAAATG

Basic information

species Glycine max
transcript GLYMA05G25550.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G25550.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G48050.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaggttttttctgtctttgtttcttgtattttatattggtttatctgtactggcttcaattttgcctcttcattttttatttatttcttagttttctgtgcagCCTGATTCATTTTACTTAAATGTACTTCCTTTTGCTGAGGATGTGCGAGAGTTTCAATTCCCTTCCTTCACTAATTTCCCAGCATCGTGGCAACCAAATG
||| |||  |  |||   | | |  || |    | |||  | |||| | |           | || || ||   |  | |||||  |     |||||   |||||||||||| |||||||| ||||| || ||||| || |||||||| || ||||||| ||| ||||| ||||  ||  | ||  |||| ||| | ||| |||
gtaagttaatagtgt---tatcttctgaaaggaaaatt--tctatccgaa-----------tctgactatttgatgatcatttacct-----ttttc---gcagCCTGATTCGTTTTACTTCAATGTGCTACCTTTCGCCGAGGATGTCCGCGAGTTTCCATTTCCTTCTTTCAACAAGCTTCCTTCATCATGGAAGCCAGATG

upper sequence: GLYMA05G25550.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv15s0048g00930.t01 (Vitis vinifera), 3'ss of exon 6
gtaggttttttctgtctttgtttcttgtattttatattggtttatctgtactggcttcaattttgcctcttcattttttatttatttcttagttttctgtgcagCCTGATTCATTTTACTTAAATGTACTTCCTTTTGCTGAGGATGTGCGAGAGTTTCAATTCCCTTCCTTCACTAATTTCCCAGCATCGTGGCAACCAAATG
                 |   ||||  | |   || ||  |  |||  |    | |     || | | | ||  ||        ||  |   ||| |||  ||||| |||||||||||||| ||||||||||||| |||||||||||| || || ||||| || || || |||| |||| |||| ||||||||||| || ||||
----------------gtaagttctcatgtgcaattttattacatcccttgaagttgttggttggtcacatcccttaagcaagcttgttggatttgctgcacagCCAGATTCATTTTACTTCAATGTACTTCCTTATGCTGAGGATGTTCGGGAATTTCAGTTTCCATCTTTCAGTAATCTCCCTGCATCGTGGCAGCCGAATG

upper sequence: GLYMA05G25550.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv15s0048g00940.t01 (Vitis vinifera), 3'ss of exon 6
gtaggttttt-tctgtc--tttgtttcttgtatttta--tattggtttatctgtactggct-tcaattttgc--ctcttcattttttattta---tttcttagttttctgtgcagCCTGATTCATTTTACTTAAATGTACTTCCTTTTGCTGAGGATGTGCGAGAGTTTCAATTCCCTTCCTTCACTAATTTCCCAGCATCGTGGCAACCAAATG
||| ||| |  | ||    ||| || |||    |  |  | |  ||||  |  |     || |  |||||    |||| | ||   ||   |   ||| |   ||| |||  ||||||||||| |||||||| ||||||||||| | |||||||||||| | ||| ||||| || || || ||||  ||| | ||    || ||||| |||||||
gtaagttctcatatgctattttattccttcccatgaagttgtcagtttggccatttcatctctttattttattgctctcctttccctaagaaagctttttgtttttcctggacagCCTGATTCGTTTTACTTTAATGTACTTCCCTATGCTGAGGATGTTCAAGAATTTCAGTTTCCATCTTTCAGCAATCTTCCTTTGTCATGGCAGCCAAATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26268991|gb|CA820054.1|CA820054
EST:     ATGTTGTCATTGGGGTCTTGACACCCAATTTATCTGATAAAGAAAATATT                         CCTGATTCATTTTACTTAAATGTACTTCCTTTTGCTGAGGATGTGCGAGAG
genomic: ATGTTGTCATTGGGGTCTTGACACCCAATTTATCTGATAAAGAAAATATTgtaggttttt ... ttctgtgcagCCTGATTCATTTTACTTAAATGTACTTCCTTTTGCTGAGGATGTGCGAGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actggcttcaattttgcctcttcattttttatttatttcttagttttctgtgcagCCTGATTCATTTTACTTAAATGTACTTCCTTTTGCTGAGGATGTGCGAGAGTTTCAATTCCCTTCCTTCACTAATTTCCCAGCATCGTGGCAACCAAATG
                                   tttcttagttttct  CT-rich tract
                  tcttcattttttattt  TA-rich tract