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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgatagtttatttagtttctgcactagtgtttataatgttttcagcgatatgtctttgccctttacagaatcttcatgtgatactattttgtgtcttcagGTGGTGCATTCTGGCCAACTTTCCTCATTGCTAACATTGCTGCATTAATTGCAAGTCGGGCTATGACAACAGCCACATTTTCTTGTATAAAACAGTCAGC

Basic information

species Glycine max
transcript GLYMA05G24530.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G24530.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv12s0142g00170.t01 (Vitis vinifera), 3'ss of exon 4
gtaagtgatagtttatttagtttctgcactagtgtttataatgttttcagcgatatgtctttgccctttacagaatcttcatgt--gatactattttgtgtcttcagGTGGTGCATTCTGGCCAACTTTCCTCATTGCTAACATTGCTGCATTAATTGCAAGTCGGGCTATGACAACAGCCACATTTTCTTGTATAAAACAGTCAGC
    |||||  | |||| |     |    |    ||||  |  || |  |    ||| || |    |  | | ||      ||   || | | | || ||||| |||||||||| |||||||||   ||||||||||| |||||||||||| ||||||| |||||||| |||||||| ||||||||||| ||| ||||||| ||| |
----gtgat--tatattaaacaagtaggttgaattttaagaaattgt-ggttgcatgcctattgtttgaagaaaaaggaactgaaggaaattttattctgtctccagGTGGTGCTTTCTGGCCAGTCTTCCTCATTGCCAACATTGCTGCACTAATTGCCAGTCGGGCAATGACAACGGCCACATTTTCATGTGTAAAACAATCAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgatatgtctttgccctttacagaatcttcatgtgatactattttgtgtcttcagGTGGTGCATTCTGGCCAACTTTCCTCATTGCTAACATTGCTGCATTAATTGCAAGTCGGGCTATGACAACAGCCACATTTTCTTGTATAAAACAGTCAGC
                                              tgtcttc  CT-rich tract
                                   atactatttt  TA-rich tract