Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtctgttctttcatggtttaatatatatgttgcttttgttaaatacagctattgttttaactaagacactccaaatattttgtcagGCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACATGGCTGTTCCTGAG

Basic information

species Glycine max
transcript GLYMA05G22320.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37995826|gb|CF807415.1|CF807415
EST:     GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAG                         GCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAANATCATCACAT
genomic: GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAGgtttgtctgt ... attttgtcagGCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACAT
EST: gi|31470201|gb|CD412349.1|CD412349
EST:     GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAG                         GCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACAT
genomic: GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAGgtttgtctgt ... attttgtcagGCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACAT
EST: gi|15815566|gb|BI787841.1|BI787841
EST:     GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAG                         GCATAGCCCCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACAT
genomic: GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAGgtttgtctgt ... attttgtcagGCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACAT
EST: gi|16279966|gb|BI943709.1|BI943709
EST:     GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAG                         GCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACAT
genomic: GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAGgtttgtctgt ... attttgtcagGCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACAT
EST: gi|18848708|gb|BM567820.1|BM567820
EST:     GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAG                         GCATAGCCGCAAGCCATGGGCAAAGTTCATTAAT
genomic: GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAGgtttgtctgt ... attttgtcagGCATAGCCGCAAGCCATGGGCAAAGTTCATTAAT
EST: gi|17153984|gb|BM143917.1|BM143917
EST:     GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAG                         GCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACAT
genomic: GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAGgtttgtctgt ... attttgtcagGCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACAT
EST: gi|17518848|gb|BM187890.1|BM187890
EST:     CCACATCTTGCAGCACTTATCGGGAG                         GCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACAT
genomic: CCACATCTTGCAGCACTTATCGGGAGgtttgtctgt ... attttgtcagGCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACAT
EST: gi|20814462|gb|BQ298940.1|BQ298940
EST:     GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAG                         GCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACAT
genomic: GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAGgtttgtctgt ... attttgtcagGCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACAT
EST: gi|192303250|gb|FG995586.1|FG995586
EST:     GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAG                         GCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACAT
genomic: GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAGgtttgtctgt ... attttgtcagGCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACAT
EST: gi|31465610|gb|CD407638.1|CD407638
EST:     GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAG                         GCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACAT
genomic: GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAGgtttgtctgt ... attttgtcagGCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACAT
EST: gi|16343159|gb|BI968754.1|BI968754
EST:     GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAG                         GCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAAAAAATCATCACAT
genomic: GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAGgtttgtctgt ... attttgtcagGCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACAT
EST: gi|22927857|gb|BU544996.1|BU544996
EST:     GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAG                         GCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACAT
genomic: GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAGgtttgtctgt ... attttgtcagGCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACAT
EST: gi|4299430|gb|AI442903.1|AI442903
EST:     GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAG                         GCATAGCCGCAAGCCATGGGCANAGTTCATTAATGTAGAAAATCATCACAT
genomic: GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAGgtttgtctgt ... attttgtcagGCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACAT
EST: gi|7640075|gb|AW734384.1|AW734384
EST:     GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAG                         GCATAGCCGCAAG
genomic: GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAGgtttgtctgt ... attttgtcagGCATAGCCGCAAG
EST: gi|17401154|gb|BM177936.1|BM177936
EST:     GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAG                         GCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACAT
genomic: GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAGgtttgtctgt ... attttgtcagGCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttttgttaaatacagctattgttttaactaagacactccaaatattttgtcagGCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACATGGCTGTTCCTGAG
                       ttttaac  putative branch site (score: 2)
                                              ttttgtc  putative PPT
                  tattgttttaactaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgtctgttctttcatggtttaatatatatgttgcttttgttaaatacagctattgttttaactaagacactccaaatattttgtcagGCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACATGGCTGTTCCTGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT