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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttatttgattttgggagctcgatccatttcatgctttgtacttcaagtgaaatattattcctctctaattttgtattacatggctagcttctgtggtataggtttcagcaattctttggtgatcattcccttgtcatttttgtttgcatagGTATCATTGTCCGAAACACTCTTGTAATGTATGATCGTGAGCAGACAAAAATTGGTTTCTGGAAAACAAACTGTGCTGAGTTATGGGAAAGATTGCAGAC

Basic information

species Glycine max
transcript GLYMA05G21800.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G21800.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv07s0129g00600.t01 (Vitis vinifera), 3'ss of exon 7
gtaacttatttgattttgggagctcgatccatttcatgctttgtacttcaagtgaaatattattcctctctaat----tttgtattacatggctagcttctgtggtataggtttcagcaattctttggtgatcattcccttgtcatttttgtttgcatagGTATCATTGTCCGAAACACTCTTGTAATGTATGATCGTGAGCAGACAAAAATTGGTTTCTGGAAAACAAACTGTGCTGAGTTATGGGAAAGATTGCAGAC
|||  |||| | |    | |  |||    |||  ||| |||   |  ||| |||||| |||  || | ||| ||    ||| | ||  ||  | | ||||      ||  | ||   || || || |   || |     ||   ||  || |||| | ||||||||||||||| || |||||||| |||||||||||||||||    || ||||||||||||||||| || ||| ||||| ||||||||| | | ||   
gtattttatattacaccgagtcctca---catgccatccttctca--tcatgtgaaaaattggtcttttcttatatgttttatgttgaattaccaacttc------atctgcttgtacatttattagtgcattaggtgattaatataatt-tttgaacagGTATCATTGTCCGGAATACTCTTGTGATGTATGATCGTGAGCACTTGAAGATTGGTTTCTGGAAAACTAATTGTTCTGAGATATGGGAAATACTTCACCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataggtttcagcaattctttggtgatcattcccttgtcatttttgtttgcatagGTATCATTGTCCGAAACACTCTTGTAATGTATGATCGTGAGCAGACAAAAATTGGTTTCTGGAAAACAAACTGTGCTGAGTTATGGGAAAGATTGCAGAC
                                        tttttgttt  CT-rich tract
                                       atttttgttt  TA-rich tract