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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggtaaatgggtaatatgctgtgtatacatataaaattgtaaagatgtataatgtatctagtttccttgatggtgcacacaattttgtttctggcatctgcctaaggacttcatctctgtagGTTGTATCTTTATTGGCAAAAGTTGTAGAGCATCTTGTAACTGGGGAGACCATGCAAATGACTACAACATCTGATCAACGGTGTAG

Basic information

species Glycine max
transcript GLYMA05G21570.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G21570.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv15s0024g00850.t01 (Vitis vinifera), 3'ss of exon 7
gtaaggtaaatgggtaatatgctgtgtatacatataaaattgtaaagatgtataatgtatctagtttccttgatggtgcacacaattttgtttctggcatctgcctaaggacttcatctctgtagGTTGTATCTTTATTGGCAAAAGTTGTAGAGCATCTTGTAACTGGGGAGACCATGCAAATGACTACAACATCTGATCAACGGTGTAG
                       |||| |   |   |  || |     |  || |  ||  |||    |||  |        |  |  |  |  |  | ||||  | |  |||   | ||||||||||||||| ||||| |||| |||||||||||||||||| || || ||||||||||||||||| |  |||||||| |||||    ||
-----------------------gtgtctttgtcccattttatgttctttcatgac-taattagcagtcttatttactttttctgtactaatcttttc-tctgtatcatcactgtgtatctgtagGTTGTATCATTATTAGCAACAGTTGTAGAGCATCTTGTTACAGGTGAGACCATGCAAATGACAAGTACATCTGAGCAACGTGTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27424725|gb|CA936245.1|CA936245
EST:     TTTTGCTTTCTCGGGCTTGTGTTGCTCTTGCCTCTTTGAAAAACACAGAG                         GTTGTATCTTTATTGGCAAAAGTTGTAGAGCATCTTGTAACTGGGGAGACC
genomic: TTTTGCTTTCTCGGGCTTGTGTTGCTCTTGCCTCTTTGAAAAACACAGAGgtaaggtaaa ... atctctgtagGTTGTATCTTTATTGGCAAAAGTTGTAGAGCATCTTGTAACTGGGGAGACC
EST: gi|151411625|gb|EV281436.1|EV281436
EST:     TTTTGCTTTCTCGGGCTTGTGTTGCTCTTGCCTCTTTGAAAAACACAGAG                         GTTGTATCTTTATTGGCAAAAGTTGTAGAGCATCTTGTAACTGGGGAGACC
genomic: TTTTGCTTTCTCGGGCTTGTGTTGCTCTTGCCTCTTTGAAAAACACAGAGgtaaggtaaa ... atctctgtagGTTGTATCTTTATTGGCAAAAGTTGTAGAGCATCTTGTAACTGGGGAGACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatggtgcacacaattttgtttctggcatctgcctaaggacttcatctctgtagGTTGTATCTTTATTGGCAAAAGTTGTAGAGCATCTTGTAACTGGGGAGACCATGCAAATGACTACAACATCTGATCAACGGTGTAG
 ccttgat  putative branch site (score: 5)
                                         cttcatctct  putative PPT
             aattttgttt  TA-rich tract