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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgatgatggactacataaaactatatacttttttttctattaattcgtgtttatgttttattaattacatccacatatataatttatgtgtatatgtatacgtattagcagAATCCACAGGTAACGCTCCAGATCACAATCTGGATTTAAGTTTGGGCAATTCAACTTCAAACCCTGGCAACGATCAAGCGTTGGGGAATCAAGCCCCAAA

Basic information

species Glycine max
transcript GLYMA05G18170.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23729281|gb|BU762726.1|BU762726
EST:     GGCGGTAACAAATTTTGATCCCAGCATCTATGACAATGAGCTCAATTCCG                         AATCCACAGGTAACGCTCCAGATCACAATCTGGATTTAAGTTTGGGCAATT
genomic: GGCGGTAACAAATTTTGATCCCAGCATCTATGACAATGAGCTCAATTCCGgtaagcgatg ... gtattagcagAATCCACAGGTAACGCTCCAGATCACAATCTGGATTTAAGTTTGGGCAATT
EST: gi|22525794|gb|BU084605.1|BU084605
EST:     GGCGGTAACAAATTTTGATCCCAGCATCTATGACAATGAGCTCAATTCCG                         AATCCACAGGTAACGCTCCAGATCACAATCTGGATTTAAGTTTGGGCAATT
genomic: GGCGGTAACAAATTTTGATCCCAGCATCTATGACAATGAGCTCAATTCCGgtaagcgatg ... gtattagcagAATCCACAGGTAACGCTCCAGATCACAATCTGGATTTAAGTTTGGGCAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattaattacatccacatatataatttatgtgtatatgtatacgtattagcagAATCCACAGGTAACGCTCCAGATCACAATCTGGATTTAAGTTTGGGCAATTCAACTTCAAACCCTGGCAACGATCAAGCGTTGGGGAATCAAGCCCCAAA
  tattaat  putative branch site (score: 2)
                acatatataatttatg  TA-rich tract