Sequence
atgc intronic sequence ATGC exonic sequence...gtattgtctatatctaatatagataatgaattatttttaacctaatcaaagtaaattttttacatgcttttcaatcacaaaatggttaccctttcctcagCTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGCAATATTCAAAATAAGCCTGTG
Basic information
species | Glycine max |
transcript | GLYMA05G15750.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G15750.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G50240.1 (Arabidopsis thaliana), 3'ss of exon 7
gtattgtctatatctaatatagataatgaattatttttaacctaatcaaagtaaattttttacatgcttttcaatcacaaaatggttaccctttcctcagCTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGCAATATTCAAAATAAGCCTGTG
|| | ||| | | || | | | | | | |||| | || | || | | || | | | || ||||||||| ||||||||||| |||||||||||||||||||| || || |||||||||||||| |||||||| ||||| || || || |||||
-----gtaaacttcttagttgtatgaggtaatcccctgga---aatctcttatcagttcacagattcaacttc-tctctgtgtttgtgttattcttgtagCTTGCATCAGTCCTGCTGACATCAATGCTGAGGAAACTCTTAACACGCTCAAGTATGCAAATCGTGCTCGGAATATCCAGAACAAACCTGTT
upper sequence: GLYMA05G15750.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv07s0031g00130.t01 (Vitis vinifera), 3'ss of exon 7
gtattgtctatatctaatatagataatgaattatttttaacctaatcaaagtaaattttttacatgcttttc-----aatcacaaaatggttaccctttcctcagCTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGCAATATTCAAAATAAGCCTGTG
||| | | | | | | | | || | ||| | || || || | ||||| || |||| |||| | | || |||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| || || ||||| ||||| || |||||||||||
-tataatgcttgacaattttgatttgaatgtgcccctttgattgg--aaatttaaattcttccgtgcttctcttattaatcccaaat--gctgttctccttccagCTTGCATCAGTCCTGCTGATATCAATGCTGAGGAAACTCTTAATACTCTCAAATATGCTAATCGCGCTCGTAATATCCAGAATAAGCCTGTT
upper sequence: GLYMA05G15750.1 (Glycine max), 3'ss of exon 7
lower sequence: EFJ26093 (Selaginella moellendorffii), 3'ss of exon 7
gtattgtctatatctaatatagataatgaattatttttaacctaatcaaagtaaattttttacatgcttttcaatcacaa--aatggttaccctttcctcagCTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGCAATATTCAAAATAAGCCTGTG
||| |||||| | | || | ||| | ||| | |||| ||| | || ||||| ||| || || || ||||||||||| ||||| |||||||| || || ||||| ||||||||||| |||||
--------------------------------------------------gtatgctttttaatttttgttttcttccaatcacacgtttggtccgacgcagCATGCGTCAGCCCTGCAGATTCTAACGCAGAAGAAACTCTCAACACTCTGAAGTATGCTAATCGGGCTCGAAATATTCAAAACAAGCCGACT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcaaagtaaattttttacatgcttttcaatcacaaaatggttaccctttcctcagCTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGCAATATTCAAAATAAGCCTGTG
ttaccctttcctc CT-rich tract
taaattttttacat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattgtctatatctaatatagataatgaattatttttaacctaatcaaagtaaattttttacatgcttttcaatcacaaaatggttaccctttcctcagCTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGCAATATTCAAAATAAGCCTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatcac