1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aaatccaaatcccttacatatcatgacttcaaaataaaccattgaatacatcattctttgcttttgacatcttgtacaataattgttatttatgagtcagGTACCTTGTTCTTGCCAACATGTTGATGGAGTCTGAAGTAAATCCATTTGATGGGCAGGAAGCTAAGCC
species | Glycine max |
transcript | GLYMA05G14170.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTCAAGAATTATGATGAAGCTGGGAGTCAGAGACGTATCCAATGCTTGAA GTACCTTGTTCTTGCCAACATGTTGATGGAGTCTGAAGTAAATCCATTTGAEST: gi|9898913|gb|BE607881.1|BE607881
genomic: TTCAAGAATTATGATGAAGCTGGGAGTCAGAGACGTATCCAATGCTTGAAgtaggtgaag ... tatgagtcagGTACCTTGTTCTTGCCAACATGTTGATGGAGTCTGAAGTAAATCCATTTGA
EST: TTCAAGAATTATGATGAAGCTGGGAGTCAGAGACGTATCCAATGCTTGAA GTACCTTGTTCTTGCCAACATGTTGATGGAGTCTGAAGTAAATCCATTTGAEST: gi|9899182|gb|BE608080.1|BE608080
genomic: TTCAAGAATTATGATGAAGCTGGGAGTCAGAGACGTATCCAATGCTTGAAgtaggtgaag ... tatgagtcagGTACCTTGTTCTTGCCAACATGTTGATGGAGTCTGAAGTAAATCCATTTGA
EST: TTCAAGAATTATGATGAAGCTGGGAGTCAGAGACGTATCCAATGCTTGAA GTACCTTGTTCTTGCCAACATGTTGATGGAGTCTGAAGTAAATCCATTTGA
genomic: TTCAAGAATTATGATGAAGCTGGGAGTCAGAGACGTATCCAATGCTTGAAgtaggtgaag ... tatgagtcagGTACCTTGTTCTTGCCAACATGTTGATGGAGTCTGAAGTAAATCCATTTGA
atacatcattctttgcttttgacatcttgtacaataattgttatttatgagtcagGTACCTTGTTCTTGCCAACATGTTGATGGAGTCTGAAGTAAATCCATTTGATGGGCAGGAAGCTAAGCC
ttttgac putative branch site (score: 3)
ttgtacaataattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatccaaatcccttacatatcatgacttcaaaataaaccattgaatacatcattctttgcttttgacatcttgtacaataattgttatttatgagtcagGTACCTTGTTCTTGCCAACATGTTGATGGAGTCTGAAGTAAATCCATTTGATGGGCAGGAAGCTAAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- atccaaa
- - - - - cccttac
- - - - - - - - - - tcatgac
- - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgtac