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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatcagatattaagatatgtgctcatttttttcttgagtagtgtctgattgcttgagtataacttgtggttgctgcttgcttctttccagAGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCAGAGTGTGGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCAGCAGAG

Basic information

species Glycine max
transcript GLYMA05G09460.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G09460.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv07s0197g00080.t01 (Vitis vinifera), 3'ss of exon 7
gtacatcagatattaagatatgtgctcatttttttcttgagtagtgtctgattgcttgagtataacttgtggttgctgcttgcttctt--tccagAGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCAGAGTGTGGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCAGCAGAG
          ||||    || |  || ||| ||   |   | | | | ||||    ||| | | |  ||    |||  |||  |  ||  | |||||| |||| ||||| ||||||||||||||   |  ||||||||||||| | ||||||  |||||| ||||||||||| ||||||  |||||| | || |
---------gtatttcactaggc-cttattattgcatcatg-aatctgtgata---tgaatctcatctgaaaatgccccttattatttcatgcagAGAATTCTCAGTGTTCAGTATTCCATTCCAAGCTCTGTTCAAATATCTACCGAGTGTCACCACCTGATCTCAAGGATATTTGTTGCTGACCCTGGAGCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagtagtgtctgattgcttgagtataacttgtggttgctgcttgcttctttccagAGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCAGAGTGTGGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCAGCAGAG
                     gtataac  putative branch site (score: 3)
                                     ctgcttgcttctttcc  putative PPT
                      tataactt  TA-rich tract