Sequence
atgc intronic sequence ATGC exonic sequencegtaagctcttctcattcaatttattcaacccattttttactaagtactttatttttcaatgaacacttctagtgaatcttgtcctagGCATGTAAGATAGTTGGGGGTCAGAGATATACAAAAGGGCTTAACGAAAAGCAGATAACTTCTCTGCTAAAGGTCTCATGCCAGAGACCACGTGAACAAG
Basic information
species | Glycine max |
transcript | GLYMA05G08170.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G08170.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os06g39640.1 (Oryza sativa), 3'ss of exon 7
-------gtaagctcttctcatt--caatttattcaacccattttttactaagtactttattttt-caatgaacac-----ttctagtgaatcttgtcctagGCATGTAAGATAGTTGGGGGTCAGAGATATACAAAAGGGCTTAACGAAAAGCAGATAACTTCTCTGCTAAAGGTCTCATGCCAGAGACCACGTGAACAAG
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gttggtattaatctcatcaagtcacaaatttcattagctggtcaattatgtaacattcaaccttggtaaaagacatcatcattttgagatatttcttaccagGCCTGTAAGATTGTTGAGGGTCAGAGATATACAAAGAGGTTGAATGAAAAGCAGATCACATCATTACTCAAGGTTACTTGCCGTAGGCCTAGAGAACAGG
upper sequence: GLYMA05G08170.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv11s0016g04620.t01 (Vitis vinifera), 3'ss of exon 7
gtaagctcttctcattcaat--ttattcaacccattttttactaagtacttta----tttttcaatgaacacttctagtgaatct--tgtcctagGCATGTAAGATAGTTGGGGGTCAGAGATATACAAAAGGGCTTAACGAAAAGCAGATAACTTCTCTGCTAAAGGTCTCATGCCAGAGACCACGTGAACAAG
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gtaggctc---acattcaatattccttcaacgttttggatgcagaaaatttcaggcgtctctagctgacttatatttcctaacctatcctcccagGCTTGTAAGATTATTGGGGGACAGAGATATACCAAAGGGCTGACTGACAAGCAGATAACTTCCTTGTTAAAAGTAACATGCCAAAGACCCAGGGATCGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttttactaagtactttatttttcaatgaacacttctagtgaatcttgtcctagGCATGTAAGATAGTTGGGGGTCAGAGATATACAAAAGGGCTTAACGAAAAGCAGATAACTTCTCTGCTAAAGGTCTCATGCCAGAGACCACGTGAACAAG
tcttgtcct CT-rich tract
taagtactttattttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagctcttctcattcaatttattcaacccattttttactaagtactttatttttcaatgaacacttctagtgaatcttgtcctagGCATGTAAGATAGTTGGGGGTCAGAGATATACAAAAGGGCTTAACGAAAAGCAGATAACTTCTCTGCTAAAGGTCTCATGCCAGAGACCACGTGAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT