1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gttttatttggatgatcataatcctcttgtaattgaggggtggttatgtacgaaccaatattaatagtatggtggtttttttttatttggataattacagTCCTCCCGCAATTGAGAGGTTGTCCGGTGGCTTGTTTCATGAGGTGATTATCACAAACACCATTCCAGTTGCAGAGAAGAACTATTTCCCCCAGTTAACT
species | Glycine max |
transcript | GLYMA05G06110.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAGGAGGGAGCTAGGGAAGTGTATGCATGCTGCACTCATGCCGTTTTCAG TCCTCCCGCAATTGAGAGGTTGTCCGGTGGCTTGTTTCATGAGGTGATTATEST: gi|207806670|gb|GD779987.1|GD779987
genomic: GAGGAGGGAGCTAGGGAAGTGTATGCATGCTGCACTCATGCCGTTTTCAGgtatttgcct ... ataattacagTCCTCCCGCAATTGAGAGGTTGTCCGGTGGCTTGTTTCATGAGGTGATTAT
EST: GAGGAGGGAGCTAGGGAAGTGTATGCATGCTGCACTCATGCCGTTTTCAG TCCTCCCGCAATTGAGAGGTTGTCCGGTGGCTTGTTTCATGAGGTGATTATEST: gi|22929545|gb|BU546684.1|BU546684
genomic: GAGGAGGGAGCTAGGGAAGTGTATGCATGCTGCACTCATGCCGTTTTCAGgtatttgcct ... ataattacagTCCTCCCGCAATTGAGAGGTTGTCCGGTGGCTTGTTTCATGAGGTGATTAT
EST: GAGGAGGGAGCTAGGGAAGTGTATGCATGCTGCACTCATGCCGTTTTCAG TCCTCCCGCAATTGAGAGGTTGTCCGGTGGCTTGTTTCATGAGGTGATTAT
genomic: GAGGAGGGAGCTAGGGAAGTGTATGCATGCTGCACTCATGCCGTTTTCAGgtatttgcct ... ataattacagTCCTCCCGCAATTGAGAGGTTGTCCGGTGGCTTGTTTCATGAGGTGATTAT
atgtacgaaccaatattaatagtatggtggtttttttttatttggataattacagTCCTCCCGCAATTGAGAGGTTGTCCGGTGGCTTGTTTCATGAGGTGATTATCACAAACACCATTCCAGTTGCAGAGAAGAACTATTTCCCCCAGTTAACT
tattaat putative branch site (score: 2)
tttttttttatttgga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttatttggatgatcataatcctcttgtaattgaggggtggttatgtacgaaccaatattaatagtatggtggtttttttttatttggataattacagTCCTCCCGCAATTGAGAGGTTGTCCGGTGGCTTGTTTCATGAGGTGATTATCACAAACACCATTCCAGTTGCAGAGAAGAACTATTTCCCCCAGTTAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - tggatga
- - - - - - - - - - - cctcttg
- - - - - - - - - - - - - - - - - - -gggtggt
- - - - - - - - - - - - - - - - - - - - - - tatgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atggtgg