1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttagttatgctttatagaattcctatataatagtgtagataatttgtctgcattatgaaagaaatatagtttattgttgccatgttgtatctcctatatttttttggcatcaattatcacaaattaaataaaaggcttaaatttgacattgtatttttatttttggccagACTTTCGTGGAAGCTGACCTAAACCAAGATGGGAAAATCGACACCGAAGAGTGGGAAACTTTTGTTAAAAAGAATCCGTCACTATTAAAAATCATGACCC
species | Glycine max |
transcript | GLYMA05G05580.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGTCGGATATGAAGTTGGCAGATGATGTCATAGAAACTATTCTTGACAAG ACTTTCGTGGAAGCTGACCTAAACCAAGATGGGAAAATCGACACCGAAGAGEST: gi|151398929|gb|EV268800.1|EV268800
genomic: AGTCGGATATGAAGTTGGCAGATGATGTCATAGAAACAATTCTTGACAAGgttagttatg ... ttttggccagACTTTCGTGGAAGCTGACCTAAACCAAGATGGGAAAATCGACACCGAAGAG
EST: AGTCAGATATGAAGTTGGCAGATGATGTCATAGAAACAATTCTCGACAAG ACTTTCGTGGAAGCTGACCTAAACCAAGATGGGAAAATCGACACCGAAGAGEST: gi|151409699|gb|EV279507.1|EV279507
genomic: AGTCGGATATGAAGTTGGCAGATGATGTCATAGAAACAATTCTTGACAAGgttagttatg ... ttttggccagACTTTCGTGGAAGCTGACCTAAACCAAGATGGGAAAATCGACACCGAAGAG
EST: AGTCGGATATGAAGTTGGCAGATGATGTCATAGAAACAATTCTTGACAAG ACTTTCGTGGAAGCTGACCTAAACCAAGATGGGAAAATCGACACCGAAGAGEST: gi|192316102|gb|FK007163.1|FK007163
genomic: AGTCGGATATGAAGTTGGCAGATGATGTCATAGAAACAATTCTTGACAAGgttagttatg ... ttttggccagACTTTCGTGGAAGCTGACCTAAACCAAGATGGGAAAATCGACACCGAAGAG
EST: AGTCGGATATGAAGTTGGCAGATGATGTCATAGAAACAATTCTTGACAAG ACTTTCGTGGAAGCTGAC-TAAACCAAGATGGGAAA-TCGACACCGAAGAGEST: gi|7284862|gb|AW597349.1|AW597349
genomic: AGTCGGATATGAAGTTGGCAGATGATGTCATAGAAACAATTCTTGACAAGgttagttatg ... ttttggccagACTTTCGTGGAAGCTGACCTAAACCAAGATGGGAAAATCGACACCGAAGAG
EST: AGTCGGATATGAAGTTGGCAGATGATGTCATAGAAACAATTCTTGACAAG ACTTTCGTGGAAGCTGACCTAAACCAAGATGGGAAAATCGACACCGAAGAGEST: gi|151410148|gb|EV279956.1|EV279956
genomic: AGTCGGATATGAAGTTGGCAGATGATGTCATAGAAACAATTCTTGACAAGgttagttatg ... ttttggccagACTTTCGTGGAAGCTGACCTAAACCAAGATGGGAAAATCGACACCGAAGAG
EST: AGTCGGATATGAAGTTGGCAGATGATGTCATAGAAACAATTCTTGACAAG ACTTTCGTGGAAGCTGACCTAAACCAAGATGGGAAAATCGACACCGAAGAGEST: gi|6726203|gb|AW310557.1|AW310557
genomic: AGTCGGATATGAAGTTGGCAGATGATGTCATAGAAACAATTCTTGACAAGgttagttatg ... ttttggccagACTTTCGTGGAAGCTGACCTAAACCAAGATGGGAAAATCGACACCGAAGAG
EST: AGTCGGATATGAAGTTGGCAGATGATGTCATAGAAACAATTCTTGACAAG ACTTTCGTGGAAGCTGACCTAAACCAAGATGGGAAAATCGACACCGAAGAGEST: gi|192316103|gb|FK007164.1|FK007164
genomic: AGTCGGATATGAAGTTGGCAGATGATGTCATAGAAACAATTCTTGACAAGgttagttatg ... ttttggccagACTTTCGTGGAAGCTGACCTAAACCAAGATGGGAAAATCGACACCGAAGAG
EST: AGTCGGATATGAAGTTGGCAGATGATGTCATAGAAACAATTCTTGACAAG ACTTTCGTGGAAGCTGACCTAAACCAAGATGGGAAAATCGACACCGAAGAG
genomic: AGTCGGATATGAAGTTGGCAGATGATGTCATAGAAACAATTCTTGACAAGgttagttatg ... ttttggccagACTTTCGTGGAAGCTGACCTAAACCAAGATGGGAAAATCGACACCGAAGAG
atcacaaattaaataaaaggcttaaatttgacattgtatttttatttttggccagACTTTCGTGGAAGCTGACCTAAACCAAGATGGGAAAATCGACACCGAAGAGTGGGAAACTTTTGTTAAAAAGAATCCGTCACTATTAAAAATCATGACCC
atttgac putative branch site (score: 4)
tttttattttt putative PPT
ttaaatttgacattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttatgctttatagaattcctatataatagtgtagataatttgtctgcattatgaaagaaatatagtttattgttgccatgttgtatctcctatatttttttggcatcaattatcacaaattaaataaaaggcttaaatttgacattgtatttttatttttggccagACTTTCGTGGAAGCTGACCTAAACCAAGATGGGAAAATCGACACCGAAGAGTGGGAAACTTTTGTTAAAAAGAATCCGTCACTATTAAAAATCATGACCC
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