Sequence
atgc intronic sequence ATGC exonic sequence...taaaagaaaacggagggaatagctttctaagcttcatattataagtatttatattaaattctaaataattgttaattgtaatccttttgttttctcctagGTCACGACTACAATTTATAATCTTATCCTTGGCAAAATATATTGTGATCATCATGGGAACATGGACATCCGAGGTAATCGTCAATATTCGTGCAGACTCC
Basic information
species | Glycine max |
transcript | GLYMA05G04340.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G04340.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv02s0154g00250.t01 (Vitis vinifera), 3'ss of exon 5
-----------------taaaagaaaacggagggaatagctttctaag----cttcatattataagtatttatatt-----aaattctaaataattgttaattgtaatccttttgttttctcct-agGTCACGACTACAATTTATAATCTTATCCTTGGCAAAATATATTGTGATCATCATGGGAACATGGACATCCGAGGTAATCGTCAATATTCGTGCAGACTCC
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gtgtgtgctgctgctattgtgcttgtgcaagaaatattgcttgcttgtgtgttttcattttttggatacctgttttttgaggggaaaaaaaaaaaaaaaatctaaaatgtgtttatattgtccttagGTCACGACCACCATTTATAATCTTATCCTTGGTAAAGTGTATTGTGATCACCATGGTACAATGCACATACAAGGTAATCACCAACATTCATGCAAACTCA
upper sequence: GLYMA05G04340.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv02s0154g00240.t01 (Vitis vinifera), 3'ss of exon 7
-taaaagaaaacggagggaatagctttctaagcttcatattataagtatttatatt--aaattctaaataattgttaattgtaa--tccttttgttttctcct-agGTCACGACTACAATTTATAATCTTATCCTTGGCAAAATATATTGTGATCATCATGGGAACATGGACATCCGAGGTAATCGTCAATATTCGTGCAGACTCC
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gtgtgtgctgctgcttgattttgcttgtgcgttttcattttttggatacctgttttttaaggggaaaaaaaaaataaaatctaaaatgtgtttatattgtccttagGTCACGACCACCATTTATAATCTTATCCTTGGTAAAGTGTATTGTGATCACCATGGTACAATGCACATACAAGGTAATCGCCAACATTCATGCAAACTCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatttatattaaattctaaataattgttaattgtaatccttttgttttctcctagGTCACGACTACAATTTATAATCTTATCCTTGGCAAAATATATTGTGATCATCATGGGAACATGGACATCCGAGGTAATCGTCAATATTCGTGCAGACTCC
tccttttgttttctcc CT-rich tract
atattaaattctaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taaaagaaaacggagggaatagctttctaagcttcatattataagtatttatattaaattctaaataattgttaattgtaatccttttgttttctcctagGTCACGACTACAATTTATAATCTTATCCTTGGCAAAATATATTGTGATCATCATGGGAACATGGACATCCGAGGTAATCGTCAATATTCGTGCAGACTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA