1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...attcttcacatcacatagaaatgaaatagtttcttaaacattaaagaatattattacaattaatgcaattataacagatgttatgaattgttgagtgcagCTGCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTCATTGTGTGGATAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTG
species | Glycine max |
transcript | GLYMA05G03730.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCTTCTTCCTTGATGATCTGACTGGATTTGAGATCACATATCTACTAGAG CTGCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTCEST: gi|31462360|gb|CD404388.1|CD404388
genomic: TCTTCTTCCTTGATGATCTGACTGGATTTGAGATCACATATCTACTAGAGgtatgttccc ... ttgagtgcagCTGCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTC
EST: TCTTCTTCCTTGATGATCTGACTGGATTTGAGATCACATATCTACTAGAG CTGCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTCEST: gi|6455321|gb|AW186004.1|AW186004
genomic: TCTTCTTCCTTGATGATCTGACTGGATTTGAGATCACATATCTACTAGAGgtatgttccc ... ttgagtgcagCTGCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTC
EST: TCTTCTTCCTTGATGATCTGACTGGATTTGAGATCACATATCTACTAGAG CTGCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTCEST: gi|13787698|gb|BG650290.1|BG650290
genomic: TCTTCTTCCTTGATGATCTGACTGGATTTGAGATCACATATCTACTAGAGgtatgttccc ... ttgagtgcagCTGCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTC
EST: ATCACATATCTACTAGAG CTGCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTCEST: gi|120496159|gb|EH224326.1|EH224326
genomic: ATCACATATCTACTAGAGgtatgttccc ... ttgagtgcagCTGCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTC
EST: TCTTCTTCCTTGATGATCTGACTGGATTTGAGATCACATATCTACTAGAG CTGCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTCEST: gi|13482176|gb|BG511519.1|BG511519
genomic: TCTTCTTCCTTGATGATCTGACTGGATTTGAGATCACATATCTACTAGAGgtatgttccc ... ttgagtgcagCTGCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTC
EST: TCTTCTTCCTTGATGATCTGACTGGATTTGAGATCACATATCTACTAGAG CTGCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTCEST: gi|7283858|gb|AW596460.1|AW596460
genomic: TCTTCTTCCTTGATGATCTGACTGGATTTGAGATCACATATCTACTAGAGgtatgttccc ... ttgagtgcagCTGCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTC
EST: CTTCTTCCTTGATGATCTGACTGGATTTGAGATCACATATCTACTAGAG CTGCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTCEST: gi|209729478|gb|BW655108.1|BW655108
genomic: CTTCTTCCTTGATGATCTGACTGGATTTGAGATCACATATCTACTAGAGgtatgttccc ... ttgagtgcagCTGCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTC
EST: TCTTCTTCCTTGATGATCTGACTGGATTTGAGATCACATATCTACTAGAG CTGCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTCEST: gi|10254275|gb|BE822041.1|BE822041
genomic: TCTTCTTCCTTGATGATCTGACTGGATTTGAGATCACATATCTACTAGAGgtatgttccc ... ttgagtgcagCTGCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTC
EST: TCTTCNNNCTTGATGATCTGACNNNATTTGAGATCACATATCTACTAGAG CTGCCGNNNNCTTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTCEST: gi|209698687|gb|BW656512.1|BW656512
genomic: TCTTCTTCCTTGATGATCTGACTGGATTTGAGATCACATATCTACTAGAGgtatgttccc ... ttgagtgcagCTGCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTC
EST: TCTTCTTCCTTGATGATCTGACTGGATTTGAGATCACATATCTACTAGAG CTGCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTCEST: gi|13482252|gb|BG511595.1|BG511595
genomic: TCTTCTTCCTTGATGATCTGACTGGATTTGAGATCACATATCTACTAGAGgtatgttccc ... ttgagtgcagCTGCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTC
EST: TCTTCTTCCTTGATGATCTGACTGGATTTGAGATCACATATCTACTAGAG CTGCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTC
genomic: TCTTCTTCCTTGATGATCTGACTGGATTTGAGATCACATATCTACTAGAGgtatgttccc ... ttgagtgcagCTGCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTC
gaatattattacaattaatgcaattataacagatgttatgaattgttgagtgcagCTGCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTCATTGTGTGGATAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTG
ttataac putative branch site (score: 2)
ttattacaattaatgc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attcttcacatcacatagaaatgaaatagtttcttaaacattaaagaatattattacaattaatgcaattataacagatgttatgaattgttgagtgcagCTGCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTCATTGTGTGGATAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTG
- - - cacatca
- - - - - - - - - aaatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttatg