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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgattgcctgtttagtaagcaaatctttagattcttttacacgccaaaaatattgaccttctcgtgatgtaatcttaaagctgaaagtgtattctgcagGTGGCCATTATTACTCCTTTTAATTTTCCCTTGGAGATTCCTGTCCTTCAATTGATGGGTGCCCTTTACATGGGCAACAAGCCAGTCCTTAAAGTTGACA

Basic information

species Glycine max
transcript GLYMA05G01300.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G01300.3 (Glycine max), 3'ss of exon 6
lower sequence: Vv17s0000g05800.t01 (Vitis vinifera), 3'ss of exon 7
-gtgattgcctgtttagtaagcaaatctttagattcttttacacgccaaaaatattgaccttctcgtgatgtaatcttaaagct-gaaagtgtattc-tgcagGTGGCCATTATTACTCCTTTTAATTTTCCCTTGGAGATTCCTGTCCTTCAATTGATGGGTGCCCTTTACATGGGCAACAAGCCAGTCCTTAAAGTTGACA
  ||     |  | |  |||  ||   ||| | |  ||  | | |   | |         ||    || |  ||| || |   | || |    |||  |||||||||| ||| |||| || |||||||| || |||||||||||||||||||| |||||||| |||||||||||||||||||| ||  | ||||| ||||| |
tttgtgcatcaatatgttaaaaaa---ttttgttcattgcaaaagtagacagccactcaatttatatgtttcaattttcacttttgagaaatcattggtgcagGTGGCAATTGTTACACCCTTTAATTTCCCTTTGGAGATTCCTGTCCTTCAGTTGATGGGAGCCCTTTACATGGGCAACAAACCCATTCTTAAGGTTGATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16995634|gb|BM085006.1|BM085006
EST:     GCCATATGGTCCC                         GTGGCCATTATTACTCCTTTTAATTTTCCCTTGGAGATTCCTGTCCTTCAA
genomic: GCCATATGGTCCCgtaaggattt ... tattctgcagGTGGCCATTATTACTCCTTTTAATTTTCCCTTGGAGATTCCTGTCCTTCAA
EST: gi|192329935|gb|FK021521.1|FK021521
EST:     AAATCATCTTGGACAACAAAGTCATGGGTTTTCGTTGGCCATATGGTCCC                         GTGGCCATTATTACTCCTTTTAATTTTCCCTTGGAGATTCCTGTCCTTCAA
genomic: AAATCATCTTGGACAACAAAGTCATGG-TTTTCGTTGGCCATATGGTCCCgtaaggattt ... tattctgcagGTGGCCATTATTACTCCTTTTAATTTTCCCTTGGAGATTCCTGTCCTTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaaaatattgaccttctcgtgatgtaatcttaaagctgaaagtgtattctgcagGTGGCCATTATTACTCCTTTTAATTTTCCCTTGGAGATTCCTGTCCTTCAATTGATGGGTGCCCTTTACATGGGCAACAAGCCAGTCCTTAAAGTTGACA
      tattgac  putative branch site (score: 2)
                         taatcttaaa  TA-rich tract